PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g10580.1
Common NameLOC4327073, Os01g0202500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family DBB
Protein Properties Length: 358aa    MW: 37090.2 Da    PI: 6.3796
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g10580.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.5e-06444539
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                       C+ +e  e++  C  ++  lC+ C l+ H        H +
  LOC_Os01g10580.1  4 LCSACEAAEARVLCCADDAALCARCDLHVHAAnrlagkHHR 44
                      7******99*********************55678888554 PP

2zf-B_box30.29e-105999337
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      +++C+ +++ ++ +fC +++ llC+ C ++ H        H
  LOC_Os01g10580.1 59 PPTCDICQDAHAYFFCVEDRALLCRACDVAVHTAnalvsaH 99
                      789***************************99545566666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.566147IPR000315B-box-type zinc finger
CDDcd000215.25E-6344No hitNo description
SMARTSM003367.6E-1657104IPR000315B-box-type zinc finger
PROSITE profilePS501199.49957104IPR000315B-box-type zinc finger
PfamPF006433.7E-85991IPR000315B-box-type zinc finger
CDDcd000215.47E-962104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD DAALCARCDL HVHAANRLAG KHHRLPLLSS SSSSSSPSPP  60
TCDICQDAHA YFFCVEDRAL LCRACDVAVH TANALVSAHR RFLLTGVHVG LDAAADDDDK  120
HPPHPLSSSL PRNTAPPPQP PPKRSPSPIY SDDDVIDWAT GGHDIGITGN LPDWSLVDEQ  180
FNTPALPPVV TKTPPKRASR GPVTAGTAAA VFGNLAGGSP DWPLNEFFGF ADFSSGFGFA  240
ENGTSKADSG KIGSMDGSPN GGRSSSSSSS SSAAAAGGGG GGQDFFGQVP EVHWAVPELP  300
SPPTASGLHW QRDPRYGGGA TDASAVFVPD ISSPENPFRC FAAAAAGDHT MKRRRRC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.151980.0leaf| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160115410.0
Expression AtlasQ0JPT7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g10580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g10580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2421760.0AK242176.1 Oryza sativa Japonica Group cDNA, clone: J075159I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630321.10.0PREDICTED: B-box zinc finger protein 22
TrEMBLQ0JPT70.0Q0JPT7_ORYSJ; Os01g0202500 protein
STRINGLOC_Os01g10580.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18041634
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-30light-regulated zinc finger protein 1