PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g10370.1
Common NameB1015E06.11, LOC4327064, Os01g0200600, OSNPB_010200600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 229aa    MW: 24558.4 Da    PI: 6.419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g10370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.5e-174694355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  LOC_Os01g10370.1 46 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 94
                      9****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-3445108IPR001471AP2/ERF domain
PROSITE profilePS5103222.845102IPR001471AP2/ERF domain
PfamPF008479.7E-124694IPR001471AP2/ERF domain
CDDcd000182.56E-2946104No hitNo description
Gene3DG3DSA:3.30.730.101.0E-3046103IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2046103IPR016177DNA-binding domain
PRINTSPR003672.8E-94657IPR001471AP2/ERF domain
PRINTSPR003672.8E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAASEQSSES SSTASTSSCG KKQQVAGKRK REDVGGGGEQ AAAVAYRGVR MRAWGKWVSE  60
IREPRKKSRI WLGTFPCPEM AARAHDVAAL SIKGARAVLN FPDLAPALPR PASLAPRDVQ  120
AAAALAAVMH HHKHPSSSTS TSSPPAAPPP DEHHPRHEPQ QPESSREDDQ QQQPAAAAAA  180
QMAVAELVFD ELAPLWVEDV VEFGTSDHCW TAYDALDPIG FQPLLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1646102663ATERF1
3gcc_A8e-1646102663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.558370.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329940820.0
Expression AtlasQ8LRE9-
Function -- GeneRIF ? help Back to Top
  1. OsAP21 may play an important role in the response of transgenic Arabidopsis plants to salt/drought stresses.
    [PMID: 23104474]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g10370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g10370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3393740.0AY339374.1 Oryza sativa (japonica cultivar-group) Ap21 mRNA, complete cds.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0031970.0AP003197.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1015E06.
GenBankAK1088730.0AK108873.1 Oryza sativa Japonica Group cDNA clone:002-152-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644400.11e-165PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD34e-45DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0E0MSQ91e-165A0A0E0MSQ9_ORYRU; Uncharacterized protein
TrEMBLQ8LRE91e-165Q8LRE9_ORYSJ; Ap21
STRINGLOC_Os01g10370.11e-165(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-31ERF family protein
Publications ? help Back to Top
  1. Jin X, et al.
    Transcription factor OsAP21 gene increases salt/drought tolerance in transgenic Arabidopsis thaliana.
    Mol. Biol. Rep., 2013. 40(2): p. 1743-52
    [PMID:23104474]