PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g09620.1
Common NameLOC4327304, Os01g0192000, P0671B11.13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 387aa    MW: 41422.5 Da    PI: 6.8451
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g09620.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-08121141526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C++f++ G Ck+Gd C +aHg
  LOC_Os01g09620.1 121 ACPDFRK-GGCKRGDACEYAHG 141
                       7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5116142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103117143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5120143IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6121141IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258151175IPR000571Zinc finger, CCCH-type
SMARTSM0035612151174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MMMMGEGVSS VPPWSHLPVS GVDVLGGGGG GGDEMTPYVI AALRDYLPAN DVGVGADEEE  60
EAAAMAAAVD AYACDEFRMY EFKVRRCARG RSHDWTECPF AHPGEKARRR DPRKYHYSGT  120
ACPDFRKGGC KRGDACEYAH GVFECWLHPA RYRTQPCKDG TACRRRVCFF AHTPDQLRVL  180
PAQQSSPRSV ASSPLAESYD GSPLRRQAFE SYLTKTIMSS SPTSTLMSPP KSPPSESPPL  240
SPDGAAAIRR GSWPGVGSPV NDVLASFRQL RLNKVKSSPS GGWSYPSSSA VYGSPKAATG  300
LYSLPTTPLA STATVTTASS FMPNLEPLDL GLIGDEEPVQ RVESGRALRE KVFERLSRDG  360
AISGDATAFA TAGVGLDVDW VSDLIN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.202440.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329859790.0
Expression AtlasQ9FU27-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in leaf and panicles, but is down-regulated during natural leaf senescence, panicle development and pollination. {ECO:0000269|PubMed:16778011}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g09620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g09620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0027460.0AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11.
GenBankAK1007700.0AK100770.1 Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621800.10.0PREDICTED: zinc finger CCCH domain-containing protein 2
SwissprotQ9FU270.0C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0E0MSJ10.0A0A0E0MSJ1_ORYRU; Uncharacterized protein
TrEMBLB7EQW00.0B7EQW0_ORYSJ; C3H transcription factor
STRINGLOC_Os01g09620.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-80C3H family protein
Publications ? help Back to Top
  1. Kong Z,Li M,Yang W,Xu W,Xue Y
    A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice.
    Plant Physiol., 2006. 141(4): p. 1376-88
    [PMID:16778011]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]