PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g09550.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 286aa    MW: 31618 Da    PI: 7.1582
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g09550.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.26.3e-1043797128
               NAM  97 gelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  LOC_Os01g09550.3   4 GRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 37 
                       6889*********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.616156IPR003441NAC domain
SuperFamilySSF1019416.8E-13356IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVSGRQKGCK KILVLYTNFG KHRKPEKTNW VMHQYHLGDL EEEKEGELVV CKIFYQTQPR  60
QCSWSSDRGG GAAATASAVT TAAVQQDQQR RRDSGSGSCS STRDHEVSAT SYSTAGYAVA  120
AAVEMQHLKH AADHFSFAPF RKSFEEVGIS GDQVHSNQLG RSEQQHAGQE QQPHRPLLAT  180
TTAVPATAFL ISRPTNPVSN IVPPAMQHAS VVLDHDQFHV PAILLHHDKF QQQQQKLDRR  240
SAGLEELIMG CTSSSTKGEA SIPHSQETEW PYQPYWTPDN QDHHG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.274690.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379909620.0
Expression AtlasB7E6R6-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g09550.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g09550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5414720.0EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds.
GenBankAK1061520.0AK106152.1 Oryza sativa Japonica Group cDNA clone:001-207-H11, full insert sequence.
GenBankAK0662310.0AK066231.1 Oryza sativa Japonica Group cDNA clone:J013059M09, full insert sequence.
GenBankAK0617160.0AK061716.1 Oryza sativa Japonica Group cDNA clone:001-037-H07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615055.10.0PREDICTED: NAC domain-containing protein 73 isoform X1
RefseqXP_015615071.10.0PREDICTED: NAC domain-containing protein 73 isoform X4
TrEMBLB7E6R60.0B7E6R6_ORYSJ; cDNA clone:001-037-H07, full insert sequence
STRINGLOC_Os01g09550.10.0(Oryza sativa Japonica Group)
STRINGORGLA01G0055000.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-27NAC domain containing protein 75