PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g09080.1
Common NameLOC4325657, Os01g0185900, OSNPB_010185900, P0510F03.24
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 508aa    MW: 52125.2 Da    PI: 6.8304
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g09080.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29237296159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+H h+
  LOC_Os01g09080.1 237 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCADDMSILITTYEGTHSHP 296
                       58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-31222298IPR003657WRKY domain
SuperFamilySSF1182903.4E-27230298IPR003657WRKY domain
PROSITE profilePS5081127.772232298IPR003657WRKY domain
SMARTSM007746.6E-36237297IPR003657WRKY domain
PfamPF031062.1E-26238296IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDVVVESPPV RDEKKVDVAA IGGAPPIVFE SFAPSTQRDS TIIKKEEKME AAKAEMGEVR  60
EENERLKTML TRIVSDYKSL HTHFLDVVKV KEQTAAELSG DDDDDEPDDL VSLSLCTRPN  120
AAATRRKGHE RTPSSGGGGD DGRLSLGLSC ARGGVASDDD DDKQASRRAL PPMPVLNLSS  180
DSSGDAAGAG AGEPTQPNKA SRSSSGGGDG ADDEVLQQQQ AKKARVSVRV KCDTPTMNDG  240
CQWRKYGQKI SKGNPCPRAY YRCTVAPNCP VRKQVQRCAD DMSILITTYE GTHSHPLPPA  300
AAAMASTTSA AAAMLTSGST NSTMHGSGGV HHHLPFASAV GGGGGVGLLG PTTISTATSC  360
PTVTLDLTAP HSLLHPSSAS PYAAAAAGYE SSRALPAAWS SGYLAYGGAA AAQPYYAKGV  420
APSPFGHHFG MMGMAAAAAR PAPEQLFGGQ TTSPYLQRAI GGGGVAPAAV TDTIAKAITS  480
DPSFQSVLAA AITSYMGRGG GAAAPNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21224300176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221230KKARVSVRVK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.883600.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567658550.0
Expression AtlasQ5VRX5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g09080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g09080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892400.0AK289240.1 Oryza sativa Japonica Group cDNA, clone: J100075H09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625260.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLQ5VRX50.0Q5VRX5_ORYSJ; Os01g0185900 protein
STRINGLOC_Os01g09080.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-43WRKY DNA-binding protein 72