PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g07120.2
Common NameDREB2A, ERF40, LOC4324418, Os01g0165000, OsJ_000494
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 275aa    MW: 30665.2 Da    PI: 5.8268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g07120.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-1975124255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+++++g
  LOC_Os01g07120.2  75 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTALEAAHAYDEAARAMYG 124
                       59****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-1374124IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2075133IPR016177DNA-binding domain
SMARTSM003804.1E-3375138IPR001471AP2/ERF domain
PROSITE profilePS5103221.82575132IPR001471AP2/ERF domain
CDDcd000181.03E-2976134No hitNo description
Gene3DG3DSA:3.30.730.108.7E-3176133IPR001471AP2/ERF domain
PRINTSPR003676.4E-97687IPR001471AP2/ERF domain
PRINTSPR003676.4E-998114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MERGEGRRGD CSVQVRKKRT RRKSDGPDSI AETIKWWKEQ NQKLQEENSS RKAPAKGSKK  60
GCMAGKGGPE NSNCAYRGVR QRTWGKWVAE IREPNRGRRL WLGSFPTALE AAHAYDEAAR  120
AMYGPTARVN FADNSTDANS GCTSAPSLMM SNGPATIPSD EKDELESPPF IVANGPAVLY  180
QPDKKDVLER VVPEVQDVKT EGSNGLKRVC QERKNMEVCE SEGIVLHKEV NISYDYFNVH  240
EVVEMIIVEL SADQKTEVHE EYQEGDDGFS LFSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1476131359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.327600.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379915790.0
Expression AtlasQ0JQF7-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:12609047}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g07120.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g07120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3009710.0AF300971.2 Oryza sativa DRE binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621339.10.0PREDICTED: dehydration-responsive element-binding protein 2A
SwissprotQ0JQF70.0DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0E0BXK10.0A0A0E0BXK1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FGQ10.0A0A0E0FGQ1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MRS90.0A0A0E0MRS9_ORYRU; Uncharacterized protein
STRINGBGIOSGA002846-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-35ERF family protein
Publications ? help Back to Top
  1. Dubouzet JG, et al.
    OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.
    Plant J., 2003. 33(4): p. 751-63
    [PMID:12609047]
  2. Skinner JS, et al.
    Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.
    Plant Mol. Biol., 2005. 59(4): p. 533-51
    [PMID:16244905]
  3. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  4. Matsukura S, et al.
    Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.
    Mol. Genet. Genomics, 2010. 283(2): p. 185-96
    [PMID:20049613]