PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g07120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 282aa    MW: 31591.5 Da    PI: 6.073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g07120.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-1982131255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+++++g
  LOC_Os01g07120.1  82 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTALEAAHAYDEAARAMYG 131
                       59****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-1381131IPR001471AP2/ERF domain
PROSITE profilePS5103221.82582139IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2082140IPR016177DNA-binding domain
SMARTSM003804.1E-3382145IPR001471AP2/ERF domain
PRINTSPR003676.7E-98394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-3183140IPR001471AP2/ERF domain
CDDcd000183.19E-3083141No hitNo description
PRINTSPR003676.7E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLFRFVSCNV QLCGIIELPH WVRKKRTRRK SDGPDSIAET IKWWKEQNQK LQEENSSRKA  60
PAKGSKKGCM AGKGGPENSN CAYRGVRQRT WGKWVAEIRE PNRGRRLWLG SFPTALEAAH  120
AYDEAARAMY GPTARVNFAD NSTDANSGCT SAPSLMMSNG PATIPSDEKD ELESPPFIVA  180
NGPAVLYQPD KKDVLERVVP EVQDVKTEGS NGLKRVCQER KNMEVCESEG IVLHKEVNIS  240
YDYFNVHEVV EMIIVELSAD QKTEVHEEYQ EGDDGFSLFS Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1583138359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.327600.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379915790.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g07120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g07120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0644030.0AY064403.1 Oryza sativa DREB1 mRNA, complete cds.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0033010.0AP003301.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0701D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621339.10.0PREDICTED: dehydration-responsive element-binding protein 2A
SwissprotQ0JQF70.0DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLQ8GVD60.0Q8GVD6_ORYSA; DREB1
STRINGLOC_Os01g07120.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-35ERF family protein