PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g06852.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 650aa    MW: 73782.2 Da    PI: 6.3526
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g06852.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1812e-2595188190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.....traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       +fYn+YA+++GFs+r+s+ ++ k+++ i++rtf+Cs+ g+r ++k++ ++ ++     +r+etr+ C+a++k+++++dg ++++++ +eHnH 
  LOC_Os01g06852.1  95 DFYNAYARDMGFSIRRSSYHYVKDSTIIKNRTFCCSRAGTRGHDKRE-DQISNygqcfSRPETRCMCRACMKISLRDDGLYCIYEFLHEHNHI 186
                       6******************************************9999.3433345556**********************************9 PP

              FAR1  89 la 90 
                       la
  LOC_Os01g06852.1 187 LA 188
                       97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1895188IPR004330FAR1 DNA binding domain
PfamPF105515.9E-30310404IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MASLSNLPRS IKVTDSLHEQ VTTMPTEPAA SAGTFVLHHP GTSFHGNLEG ELETIKNGYI  60
NQDPSKIEAT PQADPSKGKA PIIGMKFNSE QEAYDFYNAY ARDMGFSIRR SSYHYVKDST  120
IIKNRTFCCS RAGTRGHDKR EDQISNYGQC FSRPETRCMC RACMKISLRD DGLYCIYEFL  180
HEHNHILATG SQALYLRSQR KITEAQMASA ENAKSVGISN KATIDLMAKE AGGYENLGFT  240
REDMKNRLYS KRSLKVNEGD TGGVLEYMEK KSSEDVNFFY SILVDEDDLI TNIFWTDSKM  300
IADYEVFGDV LCFDTTYRKL NDGRPFGLLV GVDNHKKSVV FGAALLYDET ADSFVWLFKT  360
FLKAMSGKKP QTILTDEDAA MAKAIKLVMP ESHHRICVWH MNQNACKHLA GVVKEYKKFN  420
EDFQNCIYDK EEEDEFINAW NRMLEKLLSD KRYEEEQVLQ TLNCDLYYCG DIDAEMVYKL  480
KVHESDETYL MAANNAQKLA EDVEKYLSIR HDPDLDKSGT EENVGPSKAR GIKVKEKAIR  540
GSRRPIGGFD KATQRSKKKK SDSNTSKCPV QAEVVTPSLP YTMMQIQGRS EIPTNYNHMQ  600
MPDYYHVEGA SLLQSSGYFR TSEQSQGMQH EETAQTIDTY PYSMFAHLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246255RLYSKRSLKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g06852.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g06852
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0032090.0AP003209.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1189A09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462721.10.0hypothetical protein SORBIDRAFT_02g030865, partial
TrEMBLA0A0P0V5140.0A0A0P0V514_ORYSJ; Os01g0607050 protein
STRINGLOC_Os01g06852.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-70FAR1-related sequence 5