PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g04020.1
Common NameLOC4325981, Os01g0131600, OsJ_00247, P0504H10.27
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 339aa    MW: 36528.6 Da    PI: 4.5185
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g04020.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63e-13114157149
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaa 49 
                       ++y+GVr +k +g+W+AeIr  +     +  r +lg+f+ta+ A +a+ + 
  LOC_Os01g04020.1 114 TCYRGVRLRK-WGKWAAEIRNpF-----TgHREWLGTFDTADAASAAY-QS 157
                       68******99.**********55.....45999*******55555555.43 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-8114156IPR001471AP2/ERF domain
SMARTSM003804.4E-14115169IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-14115164IPR016177DNA-binding domain
PROSITE profilePS5103217.148115174IPR001471AP2/ERF domain
PRINTSPR003674.6E-8116127IPR001471AP2/ERF domain
CDDcd000181.99E-14116147No hitNo description
Gene3DG3DSA:3.30.730.101.4E-18116166IPR001471AP2/ERF domain
PRINTSPR003674.6E-8138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAPSKQQQML LKKVMAKKPK TKRLSGFGLK PSAAFSRPHV PSAAASLQPS RRVRVVFEDP  60
DATDSDSDDD EDAGAASKKR YFELFIGKPA SSTKQASPAS TVAAYANIGK VGSTCYRGVR  120
LRKWGKWAAE IRNPFTGHRE WLGTFDTADA ASAAYQSASR NFAEEKRRRG VASSASPASS  180
ATPTPTASSS SSTSAAPFAH PSPSSVLEAT KPAPKPESPP LPEQAATPLL VEATNETAEL  240
PDDPEFYKDI LRGLQLPDID PMDFRAGLDA LDISDVPAYM NGEQDVLFTE DMLLGDFAEE  300
DDLDLDDIGD DFCEDFPEIP SGYDFGRGDM FRQVDFCV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.46630.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329863420.0
Expression AtlasQ9LGB6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g04020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g04020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8372590.0EU837259.1 Oryza sativa Japonica Group clone KCS234C10 AP2 domain containing protein mRNA, complete cds.
GenBankAY3418280.0AY341828.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP210 mRNA, complete cds.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0025260.0AP002526.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504H10.
GenBankAK1196450.0AK119645.1 Oryza sativa Japonica Group cDNA clone:002-130-G05, full insert sequence.
GenBankKC9883300.0KC988330.1 Oryza sativa AP2 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616539.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A0D3EJ880.0A0A0D3EJ88_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0MQZ00.0A0A0E0MQZ0_ORYRU; Uncharacterized protein
TrEMBLI1NJY50.0I1NJY5_ORYGL; Uncharacterized protein
TrEMBLQ9LGB60.0Q9LGB6_ORYSJ; AP2 domain containing protein
TrEMBLR9TI300.0R9TI30_ORYSA; AP2 transcription factor
STRINGLOC_Os01g04020.10.0(Oryza sativa Japonica Group)
STRINGORGLA01G0017500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1281645
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.38e-12related to AP2 2