PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035980-PA
Common NameOsI_38778
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LFY
Protein Properties Length: 162aa    MW: 17541.2 Da    PI: 4.6819
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035980-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY128.58.7e-4011391154
           FLO_LFY   1 mdpea.fsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmk 91 
                       mdp++ fsa+  f+wd  +    +pa + +    +           a+  releel+ +yGvr++tva+i+elGft+stL+ m+++eldd+m+
  BGIOSGA035980-PA   1 MDPNDaFSAAhPFRWDLGPP---APAPVPPPP--P-------PPPLANVPRELEELVAGYGVRMSTVARISELGFTASTLLAMTERELDDMMA 81 
                       67655476654899995322...222221111..1.......233455679****************************************** PP

           FLO_LFY  92 slseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepv 154
                       +l+ +fr+dll+Ger+G++aa+raer rl++     +++    +++ +++d +sqe++ ++  
  BGIOSGA035980-PA  82 ALAGLFRWDLLLGERFGLRAALRAERGRLMSLG--GRHH---GHQSGSTVDGASQEAIDKNML 139
                       ******************************965..5555...67888899******9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.2E-521136IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDPNDAFSAA HPFRWDLGPP APAPVPPPPP PPPLANVPRE LEELVAGYGV RMSTVARISE  60
LGFTASTLLA MTERELDDMM AALAGLFRWD LLLGERFGLR AALRAERGRL MSLGGRHHGH  120
QSGSTVDGAS QEAIDKNMLG DLDGLLEEDK MRMVMAAMVD QL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ude_A4e-20411101180GINLFY PROTEIN
4ude_B4e-20411101180GINLFY PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO22747890.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In the vegetative phase, expressed in shoot meristems and leaf primordia. In the reproductive phase, present in the meristems of primary and secondary branches at primordial and elongating stages, but later transiently down-regulated from the meristems, when the meristem identity change from inflorescence to spikelet. Subsequent expression recovery when spikelets are differentiated, with an accumulation in floral meristems and in primordia of all floral organs, including lodicules, stamens, carpels and ovules. {ECO:0000269|PubMed:21910771}.
UniprotTISSUE SPECIFICITY: In very young panicle but not in mature florets, mature leaves, roots or apical meristems. {ECO:0000269|PubMed:9482818}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635355.17e-69probable transcription factor FL
SwissprotQ0JAI16e-70FL_ORYSJ; Probable transcription factor FL
TrEMBLB8BMK41e-111B8BMK4_ORYSI; Uncharacterized protein
STRINGOGLUM04G23830.13e-68(Oryza glumipatula)
STRINGOMERI04G19020.13e-68(Oryza meridionalis)
STRINGORUFI04G25610.13e-68(Oryza rufipogon)
STRINGOS04T0598300-003e-68(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82693649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.15e-13floral meristem identity control protein LEAFY (LFY)