PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022664-PA
Common NameOsI_22469
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 464aa    MW: 51510.8 Da    PI: 5.3446
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022664-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.56.6e-331042431128
               NAM   1 lppGfrFhPtdeelvveyLkkk..vegkk...leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                       lp+G++F+Ptd+el+++ L+k+  v +k    +++  +i++v+    i++++P++Lp  vk++ +  +fF+++ k+y+tg rk+r+++     
  BGIOSGA022664-PA 104 LPRGVKFDPTDQELLWHLLAKHgkVGAKAhpfIDE--FIPTVEeddgICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGIRKRRKINtgdla 193
                       799************99998862255555444233..2444422245**********.677888899******************86633444 PP

               NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+k+v++ +g++ g+kk +v+y  + +  k+ekt+Wvmh+y+l
  BGIOSGA022664-PA 194 DVRWHKTGKTKPVVV-DGKHLGCKKFMVLYmsTMKGGKPEKTNWVMHQYHL 243
                       667************.999***********6534666777*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-3789262IPR003441NAC domain
PROSITE profilePS5100529.535104262IPR003441NAC domain
PfamPF023652.8E-14105243IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDAVQPSNAS INRVHLVYVL VRRLALVGSL VGRGGLRLPA GGAGAAMTGT SWIIDSHRIA  60
SKIKNASGSV DASKHKWVSN PTKACPRCNH IIDNSDVVHQ WPGLPRGVKF DPTDQELLWH  120
LLAKHGKVGA KAHPFIDEFI PTVEEDDGIC YTHPQKLPGV KQDGSVSHFF HRTFKAYNTG  180
IRKRRKINTG DLADVRWHKT GKTKPVVVDG KHLGCKKFMV LYMSTMKGGK PEKTNWVMHQ  240
YHLGTGEDEV EGQYVVSKLL FQQQFKPGEK NAQDLTSADA LESIVAEDLP NIPPLPLEEH  300
VFTNQELEVL EKSETITDQG KETSEINNED NAVEDVVHMA TEKPEDGDNP SSQDPKWWEG  360
ESQFLLDSQQ LAENLAICDE FLQSQSQTSC GGGDDETDKI KPRLAVYAQL PVEDLKKDLE  420
ECQRLDPSDG TNLELENASE FRLSQIEFSQ DSFTTAWAGG KVID
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.247460.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329704520.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0604340.0AK060434.1 Oryza sativa Japonica Group cDNA clone:001-011-B08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640881.10.0PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-140NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA2YBI80.0A2YBI8_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA022664-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-140NAC family protein