PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022464-PA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 230aa    MW: 26754.2 Da    PI: 9.7822
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022464-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.4e-17132222199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v+   +l+lp +f +++  + +++ t++l de+  +++  +    ++++  l++GW++F  a++L +gD +vF+l++r++f  +
  BGIOSGA022464-PA 132 FVKPMLQSHVTGGFWLSLPTHFSRKYL-P-KRDETIRLVDEEDDEFDTLY--LANKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRTKF--K 216
                       89************************5.3.35669***************..555555..9************************99999..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  BGIOSGA022464-PA 217 VYIIRA 222
                       999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-24125223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-20126223IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-27130221No hitNo description
PfamPF023621.5E-15132222IPR003340B3 DNA binding domain
SMARTSM010192.3E-19132223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899132223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAEAASYEEQ RRRQVEANKR KLEELRLHHL SAAVRESAAK PSPVKQRKRK ARALPGAGED  60
APLRRSGRVA NLPEKPKYRD EFQDFEKRIR RSYGGKRRDL SNRVYATDEQ RDYAINAAQE  120
LEEELGSDYP IFVKPMLQSH VTGGFWLSLP THFSRKYLPK RDETIRLVDE EDDEFDTLYL  180
ANKRGLSGGW RGFSIAHKLV DGDCLVFQLI QRTKFKVYII RASSYYETDD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.496550.0callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329881890.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029800.0AK102980.1 Oryza sativa Japonica Group cDNA clone:J033115O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642147.11e-169B3 domain-containing protein Os06g0194400
SwissprotQ69V361e-170Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A0E0HM371e-168A0A0E0HM37_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PUL91e-168A0A0E0PUL9_ORYRU; Uncharacterized protein
STRINGORUFI06G06290.11e-169(Oryza rufipogon)
STRINGONIVA06G07020.11e-169(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-63B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]