PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022020-PA
Common NameOsI_21459
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 618aa    MW: 66010 Da    PI: 6.4339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022020-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.22.3e-1192175951374
              GRAS   1 lvelLlecAeavssgdlelaqa.lLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevs 88 
                       lv++L++cA+ +s+g++e+a+  +Larl e+asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++     ++ ++al++++ ++
  BGIOSGA022020-PA 217 LVRALTACADSLSAGNHEAANYyYLARLGEMASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDIGPPRELTDDAfggGDDDAMALRILNAIT 309
                       6899****************9637************************************************9989999************** PP

              GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                       Pi++f h+t N+ +l+++eg+ervH+iDfdi+qGlQWp Llq+La+R+ +p+++RiTgvg+    s++el+etg rLa++A++lg+ fef++ 
  BGIOSGA022020-PA 310 PIPRFLHFTLNERLLREFEGHERVHVIDFDIKQGLQWPGLLQSLAARAVPPAHVRITGVGE----SRQELQETGARLARVAAALGLAFEFHA- 397
                       *************************************************************....9**************************. PP

              GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.e 272
                       v++rled++l++L+vk+gE++aVn+vl++hrll+++++l++    +L l +s+ ++++ + e+e    ns+++ +rf++al+yy+a fd++ +
  BGIOSGA022020-PA 398 VVDRLEDVRLWMLHVKRGECVAVNCVLAMHRLLRDDAALTD----FLGLARSTGATILLLGEHEGGGlNSGRWEARFARALRYYAAAFDAVdA 486
                       7************************************9999....*******************8777***********************99 PP

              GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee.......sgs 357
                       a+lp++s +r+k E++ ++rei+n+va eg er+erhe+++ Wr+r+e+  GFk++ ++e++a+q +++ r+++ d y+v+ +        ++
  BGIOSGA022020-PA 487 AGLPEASPARAKAEEM-FAREIRNAVAFEGPERFERHESFAGWRRRMEDgGGFKNAGIGEREAMQGRMIARMFGPDKYTVQAHggggsggGEA 578
                       99**************.*******************************9679**********************888****888888886777 PP

              GRAS 358 lvlgWkdrpLvsvSaWr 374
                       l+l W d+pL++v+aW+
  BGIOSGA022020-PA 579 LTLRWLDQPLYTVTAWT 595
                       88**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.111191568IPR005202Transcription factor GRAS
PfamPF035148.0E-117217595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MLAGCSFSSS RHQMSTAQRF DILPCGFSKR GSRGDGAAPR VAGDARSGAT TCSFRTHPAP  60
PVTQSVSWGA KPEPGGNGNG AHRAVKRAHD EDAVEEYGPI VRAKRTRMGG DGDEVWFHQS  120
IAGTMQATAA GEGEEAEEEK VFLVPSAAAF PHGMAAAGPS LAAAKKEEYS KSPSDSSSSS  180
GTDGGSSAMM PPPQPPEFDA RNGVPAPGQA EREALELVRA LTACADSLSA GNHEAANYYY  240
LARLGEMASP AGPTPMHRVA AYFTEALALR VVRMWPHMFD IGPPRELTDD AFGGGDDDAM  300
ALRILNAITP IPRFLHFTLN ERLLREFEGH ERVHVIDFDI KQGLQWPGLL QSLAARAVPP  360
AHVRITGVGE SRQELQETGA RLARVAAALG LAFEFHAVVD RLEDVRLWML HVKRGECVAV  420
NCVLAMHRLL RDDAALTDFL GLARSTGATI LLLGEHEGGG LNSGRWEARF ARALRYYAAA  480
FDAVDAAGLP EASPARAKAE EMFAREIRNA VAFEGPERFE RHESFAGWRR RMEDGGGFKN  540
AGIGEREAMQ GRMIARMFGP DKYTVQAHGG GGSGGGEALT LRWLDQPLYT VTAWTPAGDG  600
AGGSTVSAST TASHSQQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-3624159426374GRAS family transcription factor containing p
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.891100.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154661350.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642887.10.0PREDICTED: scarecrow-like protein 28
RefseqXP_015642886.10.0PREDICTED: scarecrow-like protein 28
TrEMBLA2Y8T00.0A2Y8T0_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA022020-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-113GRAS family protein