PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA015306-PA
Common NameOsI_15431
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 98aa    MW: 10933.3 Da    PI: 4.5409
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA015306-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.96.8e-227861785
                      E--HHH.HTT---..--SEEEEEETTS............-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3 17 vlpkkfaeehggkkeesktltledesg............rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85
                      +l ++f+e++g+++e+s+tl++ d+++            rsWev+   r+++++ y+l++GW++F+++ng+++gD++vF++ 
  BGIOSGA015306-PA  7 SLARTFCESIGLVEESSITLMMIDTTStqgdqggsssssRSWEVTG--RRYKDAcYLLGAGWRRFCEDNGVRSGDVCVFTVL 86
                      799*********************99999*****************..9999999************************954 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.73198IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-14697IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-16696IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-12787IPR003340B3 DNA binding domain
CDDcd100171.03E-71284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MPAFMQSLAR TFCESIGLVE ESSITLMMID TTSTQGDQGG SSSSSRSWEV TGRRYKDACY  60
LLGAGWRRFC EDNGVRSGDV CVFTVLDTTL WRVDIERC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149601e-165AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAL6629631e-165AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634795.15e-59PREDICTED: putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS754e-60Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA2XS351e-66A2XS35_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA015306-PA4e-66(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187