PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014498-PA
Common NameOsI_17101
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 400aa    MW: 42836.7 Da    PI: 7.3194
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014498-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3941e-2987175185
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + 
  BGIOSGA014498-PA  87 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRG 175
                       89***************************955556889************************************************844 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-4178192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-2984175IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-2485172No hitNo description
SMARTSM010198.6E-2187192IPR003340B3 DNA binding domain
PfamPF023629.7E-2787190IPR003340B3 DNA binding domain
PROSITE profilePS5086313.73387192IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS  60
SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSAAN  120
EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAQAT  180
RDRLFIDWKR RADVRDPHRF QRLPLPMTSP YGPWGGGAGA FFMPPAPPAT LYEHHRFRQG  240
FDFRNINPAV PARQLVFFGS PGTGIHQHPP LPPPPPPPPP PHQLHITVHH PSPVVTAGLP  300
MVVDSVPHVN NPAAASKRVR LFGVNLDNPH PDGGQSSSGH DANALSLRMP GWQRPAPLRS  360
LELPPHMPAG AAGAESSAAS SPSSSSSSKR EAHSSLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-468419211118DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.737360.0stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977233900.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634107.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os04g0581400-like
SwissprotQ6EU301e-123Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA2XWR80.0A2XWR8_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0H5330.0A0A0E0H533_ORYNI; Uncharacterized protein
STRINGBGIOSGA014498-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-62B3 family protein