PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013144-PA
Common NameOsI_12653
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 381aa    MW: 42859.8 Da    PI: 6.692
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013144-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.3e-19421221499
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +++p +fa++++g    s  + l+++sg++W++ +   +++ +  vl++GWkeFv+ang++e+D ++F+++g s+f   v +f+ 
  BGIOSGA013144-PA  42 ESMIVPSRFANNFNGH--ISEVVNLKSPSGKTWSIGV--ANSDTGeLVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--DVLIFDP 122
                       45899*****888666..6779***************..5555555***************************99999..8888875 PP

2B338.12.8e-122733451484
                       T-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3  14 grlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       + + ++ +fa ++ g+ +  +++++e   g     +W v++  r +s++ + ++GW++F+++ngL + D+++F+l
  BGIOSGA013144-PA 273 STVGVSPEFAGRYLGP-AMAREVVMERGGGggggDQWHVRFVRRESSRG-FHGTGWRRFARDNGLLAHDVCLFEL 345
                       5566778888888444.45678999998878999*******65555555.6788*******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-2328129IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-2328125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.00229123IPR003340B3 DNA binding domain
SMARTSM010199.9E-1132123IPR003340B3 DNA binding domain
CDDcd100171.63E-1840121No hitNo description
PfamPF023625.6E-1642121IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-13252345IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-14252346IPR015300DNA-binding pseudobarrel domain
CDDcd100179.74E-11256345No hitNo description
SMARTSM010190.0095258365IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898260362IPR003340B3 DNA binding domain
PfamPF023624.6E-10274345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE  60
VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF  120
DPSGCEKATP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS  180
AYMHERACLA EQDHREEKKE GDDEDEDEDE DEDVDKDGED RYYFCRHGGR VTEYNLSKGD  240
KEEISRVPVP VEPGNPVLVK VIHASHLLSS RYSTVGVSPE FAGRYLGPAM AREVVMERGG  300
GGGGGDQWHV RFVRRESSRG FHGTGWRRFA RDNGLLAHDV CLFELRLVDG AGAGDRLRRR  360
PRPTMAVHVL RRVRGRFVLI R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359DRLRRR
2355361RLRRRPR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.517150.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329735240.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635060.0AK063506.1 Oryza sativa Japonica Group cDNA clone:001-116-F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630283.10.0B3 domain-containing protein Os03g0622100
SwissprotQ10GM40.0Y3221_ORYSJ; B3 domain-containing protein Os03g0622100
TrEMBLB8AML40.0B8AML4_ORYSI; Uncharacterized protein
STRINGOS03T0622100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-29B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]