PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013142-PA
Common NameOsI_12650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 843aa    MW: 96796 Da    PI: 9.8014
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013142-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.6e-2124113199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv+     +++ ++++p kfae++  +   + t++l+ ++g++ +v +  +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f   
  BGIOSGA013142-PA  24 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--E 107
                       56666..445555.6********888655..4459***************..**************************************..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       vk+f+ 
  BGIOSGA013142-PA 108 VKIFDP 113
                       999986 PP

2B335.81.4e-11212292183
                       EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 
                       f+ v+++s+v+++ + + +++k+a+e+  gg+    ++lt  +++g++W+vk++++k++ r +l+kGW++F ++n+L+   D + ++
  BGIOSGA013142-PA 212 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQgIVDCMKLT 292
                       77889999999999999**********76555....3455.667*********77666666.89*************9555655555 PP

3B365.67.2e-213234041299
                       HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++r+++p kfa++++g+   skt++le ++g +++v++  +kk +  vl++GW++Fv+a++L+ gDf+vFk++g  +f l v +f+ 
  BGIOSGA013142-PA 323 FHKRMTIPDKFARHFKGV--ISKTIKLEPRNGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 404
                       4568********999999..899****************..*******************************976..88889999985 PP

4B357.62.3e-18549635297
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       fkv+     ++  r+++p++f++ + gk   ++t++l+ ++g +++v++  +k+ g++ l++GWk Fv a++L+ gDf+vF++dg s+   +v
  BGIOSGA013142-PA 549 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKL--KV 632
                       5555..44444.57********555666..66789999999********..********************************986555..77 PP

                       EEE CS
                B3  95 kvf 97 
                        +f
  BGIOSGA013142-PA 633 LIF 635
                       777 PP

5B347.72.8e-157598421299
                       HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ks+ + + +++a+ +    ke +  +t  +++g+ Wev ++ +k  ++  l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
  BGIOSGA013142-PA 759 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 842
                       56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-2418116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2518116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5921114IPR003340B3 DNA binding domain
CDDcd100171.40E-2023112No hitNo description
SMARTSM010191.5E-1324114IPR003340B3 DNA binding domain
PfamPF023625.2E-1924112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-24200283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-15205283IPR015300DNA-binding pseudobarrel domain
CDDcd100175.48E-13210283No hitNo description
SMARTSM010198.9E-4212307IPR003340B3 DNA binding domain
PfamPF023627.5E-10212283IPR003340B3 DNA binding domain
PROSITE profilePS508639.122213307IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-25307418IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-23309407IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.929312405IPR003340B3 DNA binding domain
CDDcd100171.22E-20313403No hitNo description
SMARTSM010191.1E-11315405IPR003340B3 DNA binding domain
PfamPF023621.4E-18315403IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-22541640IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.704545638IPR003340B3 DNA binding domain
CDDcd100175.78E-21548635No hitNo description
SMARTSM010193.0E-12548638IPR003340B3 DNA binding domain
PfamPF023623.5E-16548635IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-21558646IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-20741840IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-18742840IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.266748843IPR003340B3 DNA binding domain
CDDcd100172.40E-13750841No hitNo description
SMARTSM010195.6E-8751843IPR003340B3 DNA binding domain
PfamPF023621.1E-13758842IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MSKSGCERCR GRGFWDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN  60
GNTCSVLVDK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA  120
SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTEWQN QPEKDVIDNC NKKMKTEHAS  180
SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP  240
GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQGIVDCMK LTRCGQKMRK  300
LNTRSTARDD QEKYFFKVMI GDFHKRMTIP DKFARHFKGV ISKTIKLEPR NGYTFDVQVT  360
KKLNILVLGS GWESFVNAHD LNMGDFLVFK YNGDFLLQVL IFDPSGCEKS TSCSMENAID  420
HVGQGWKEHN DISTSYHDQP KGNKHWMQKD SSSKGNKIGN TRSSNTPSKF SGCILPRGTC  480
LPVVQEKKMK EKIQAIHSKT PMYGNVMTKC NVSGSLVFFY KMRRPGARCR EGHAHFNGNH  540
IDGQYKNFFK VMIGRFRERM IIPNEFLQYF RGKIPRTIKL QLRDGCTYDV QVTKNLGKIS  600
LQSGWKAFVT AHDLQMGDFL VFSYDGISKL KVLIFGPSGC EKVHSRPTLK NATHCGEKWE  660
EPLHISSNSH DLPVKSPQNV SKSEKQWDSS EQENDTANIE EVALQGDDLQ GHPVLNCILP  720
KHTRLTDMQK HQLESKVGAI HSEIPIYGCI LRKSRVHGKS QTVDICREYA DVYLPFKELN  780
MTLQRHGKNW EVLCRTKDTR TKRLSTGWSR FAQENNLQVG DICLFELLKK KEYSMNVHII  840
PKK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976013370.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628067.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLB8AML10.0B8AML1_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA013142-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-23B3 family protein