PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011499-PA
Common NameOsI_09897
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 351aa    MW: 37747.4 Da    PI: 4.5815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011499-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12182224754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  BGIOSGA011499-PA 182 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 224
                       79*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.129175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16180253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.38E-5182229No hitNo description
PfamPF000101.6E-9182224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-16182245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MELDEESFLD ELMSLRRDGS APWQAPPYPG GGGGGGMMMS DLLFYGGDGG SAEARGGMDA  60
SPFQELASMA APPPQHPHEE FNFDCLSEVC NPYRSCGAQL VPSEAASQTQ TQLTPLRDTM  120
VAEEETSGDK ALLHGGGGSS SPTFMFGGGA GENSEMMAGI RGVGGGVHPR SKLHGTPSKN  180
LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY VKELTERIKT LEEEIGATPE  240
ELDLLNTMKD SSSGNNNEML VRNSTKFDVE NRGSGNTRIE ICCPANPGVL LSTVSALEVL  300
GLEIEQCVVS CFSDFGMQAS CLQEDGKRQV VSTDEIKQTL FRSAGYGGRC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183190ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.58600.0callus| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329889880.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0600290.0AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629094.10.0transcription factor bHLH93
SwissprotQ9LSL15e-63BH093_ARATH; Transcription factor bHLH93
TrEMBLB8AMG00.0B8AMG0_ORYSI; Uncharacterized protein
STRINGONIVA03G02430.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-65beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]