PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011321-PA
Common NameOsI_10288
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 237aa    MW: 26569.5 Da    PI: 9.2971
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011321-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-17137227199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v +  +l lp++f+e++  k   +  +tl de+ ++++ ++    ++++  l++GW +F+ ++gL +gD  vF+l++ ++f  +
  BGIOSGA011321-PA 137 FVKPMLHSHVVRGFWLGLPRHFCETYLPK--HDAIVTLLDEKDEQFDTNY--LAYKNG--LSGGWAGFALDHGLLDGDATVFQLVKPTTF--K 221
                       89************************422..4568***************..566555..9**********************9986666..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v+++r+
  BGIOSGA011321-PA 222 VHIIRA 227
                       999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-20128228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-24130227IPR015300DNA-binding pseudobarrel domain
CDDcd100173.39E-26135226No hitNo description
PROSITE profilePS5086311.857137228IPR003340B3 DNA binding domain
SMARTSM010198.6E-19137228IPR003340B3 DNA binding domain
PfamPF023621.4E-15137227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA VAPETPSPMK QKRRRIIEAA  60
VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA  120
RKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDEQF  180
DTNYLAYKNG LSGGWAGFAL DHGLLDGDAT VFQLVKPTTF KVHIIRATVD DGNEVTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.90790.0callus| panicle| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379916400.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220170.0AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633231.11e-176PREDICTED: B3 domain-containing protein Os03g0184500
SwissprotQ10QS91e-178Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA2XDA61e-177A2XDA6_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA011321-PA1e-176(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-48B3 family protein