PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008150-PA
Common NameOsI_07097
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 271aa    MW: 29664.2 Da    PI: 7.546
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008150-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.6e-1529126193
                       EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f kvl+psdv+    +lv+p +++ +       + ++ + + +++ed   +g+ W +++  +k+++ + ltkGW  +++++gL++gD+v F+ 
  BGIOSGA008150-PA  29 FGKVLMPSDVSWDtEQLVIPDEHVGKLldmvvmNRPEGGFFVVVVEDgeVTGKLWLFRY--WKRDDVHCLTKGWGCYAREKGLRAGDTVSFH- 118
                       6799******977699********9999999976666667777888866677*******..******************************9. PP

                       -SSSEE..E CS
                B3  85 dgrsefelv 93 
                        ++ +++++
  BGIOSGA008150-PA 119 -STACGRFF 126
                       .44555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-1823131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-1927131IPR015300DNA-binding pseudobarrel domain
CDDcd100177.80E-1728131No hitNo description
PfamPF023621.1E-1129127IPR003340B3 DNA binding domain
SMARTSM010190.004829132IPR003340B3 DNA binding domain
PROSITE profilePS508639.17830133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KVLMPSDVSW DTEQLVIPDE HVGKLLDMVV  60
MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFHST  120
ACGRFFICCR CTCMSFLSLP TTSHRIHGSS VLPQPRAAQA AHHPFSGHAT LCLGNKASDH  180
SAPARHATAS LGCAAAQPPQ VPPTPTPRRR RRSMMVHPEP PEHTTDGMPV ILESMALVST  240
PPVAKRVRLF GVYIDVPPLR PGGEATQDFN P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624416.10.0PREDICTED: putative B3 domain-containing protein Os02g0455900
SwissprotQ6K3B10.0Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900
TrEMBLA2X4H20.0A2X4H2_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA008150-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181381010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.12e-12B3 family protein