PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008149-PA
Common NameOsI_07096
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 267aa    MW: 29406 Da    PI: 9.113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008149-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-1629125194
                       EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                       f+k l+psd  ++  +l +p ++++++g        ++led++g             + W +++  +k+ g + ltkGW+ Fv+++gLk+gD+
  BGIOSGA008149-PA  29 FEKFLMPSDLCSNtEWLGIPEEHVRKFG--------MMLEDRDGysviffqdgvvpgKLWCFRY--WKSNGVHGLTKGWRCFVREKGLKAGDT 111
                       89*******9988799********9997........888888888888888889999*******..*************************** PP

                       EEEEE-SSSEE..EE CS
                B3  80 vvFkldgrsefelvv 94 
                       + F + g+ +++l++
  BGIOSGA008149-PA 112 ISFFR-GSACGRLFI 125
                       **984.336665555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1824137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-1827126IPR015300DNA-binding pseudobarrel domain
CDDcd100179.63E-1928128No hitNo description
SMARTSM010191.1E-729130IPR003340B3 DNA binding domain
PfamPF023623.3E-1329126IPR003340B3 DNA binding domain
PROSITE profilePS5086310.67330131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE  60
DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC  120
GRLFICCRLG TRATFASSST LHHGFSMPPP PARPLVGLES GMLARDVPSL GQARLHDGNQ  180
DGGGAPSRHV PSLGRRVEAQ LSRVSSRRKR RTMKHSIPEP TIETPPILES MFLIAAPPAV  240
KCLRLFGVNI YVLPVSSSGQ PKQESSP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.709850.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160120530.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625111.10.0PREDICTED: B3 domain-containing protein Os02g0455800
SwissprotQ6K3B20.0Y2558_ORYSJ; B3 domain-containing protein Os02g0455800
TrEMBLA2X4H10.0A2X4H1_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA008149-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.15e-18B3 family protein