PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA004375-PA
Common NameOsI_03575
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 703aa    MW: 80516.3 Da    PI: 5.9201
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA004375-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.6e-1528883094
                      ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                       ++s + tl++++g++W v+l  +k +g+++lt+GW +Fv++n L+e +f++F++d+++ f  +v
  BGIOSGA004375-PA 28 LPSSAKGTLQNSEGKTWPVEL--EKLDGHVFLTTGWAKFVEDNSLREYEFLLFRYDDNMHF--MV 88
                      34677889*************..********************************998888..55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.506194IPR003340B3 DNA binding domain
SMARTSM010191.7E-6494IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-171399IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-121687IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-162996IPR015300DNA-binding pseudobarrel domain
CDDcd100176.27E-133591No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MALTAKEIPQ GFLIHIPEVD HSTFDASLPS SAKGTLQNSE GKTWPVELEK LDGHVFLTTG  60
WAKFVEDNSL REYEFLLFRY DDNMHFMVLP FGLNACEKVI RSSGSPQGKL PCDIFCCTKR  120
GRDGDRLTEA ANSLTPSHSQ VLQRTTQGHE LISPQSFPDQ HEVCGSKDGL DEHLSLNGPM  180
EDDKANAIAE VMSILDVDKV TVELFCAMLV FYKWNVDAVA EDFDICRGKP QIQNLFLKHK  240
LHFQFDIVKR KLRKFFPPDD YYSSPILESR KCSLEEPKLS NQPLQCDLTT EKCRLVDEHD  300
LCNFSQKKRR KRGSFCSPET PRRSPRLARQ NNSHDSAENT LKERSEERQP SPDSMIDQAE  360
SRSEQACLCH DKTDSGSLFQ DSKKVKPAHG EVDLCEEPQH NQGENEGNLD QVNNKETDEE  420
QIERNAVETS ESFTRRGCIK SSPASCEVPA CLRINELSLT WKPAEHVNPL EKVLLDIQRD  480
NFMKTISHVQ GIIRNHPSDL LTADVITVVV QKEIFKWNCC LKDRDAQRIV NALLEHARKI  540
KEMHNFNSEM RKEEFSAKLK VHLKWQLKEV ETIYTSLELD YKKATSDDNI AFSMLHDKKK  600
KLHNLQDEIT GLQQSLEMKK DEMQKLAHQV AEHESVFQKS LMERLRIKEV MKGYEQTLAE  660
VKVQLTSTEV GSIDIEALVK VEMDNMTKEI ELSKESLLNI TFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306310KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.792540.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975975320.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2430920.0AK243092.1 Oryza sativa Japonica Group cDNA, clone: J100023B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614209.10.0PREDICTED: B3 domain-containing protein Os03g0120900
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA2WUM30.0A2WUM3_ORYSI; Putative uncharacterized protein
TrEMBLA2ZXE30.0A2ZXE3_ORYSJ; Uncharacterized protein
STRINGBGIOSGA004375-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.17e-12B3 family protein