PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002941-PA
Common NameOsI_00758
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 364aa    MW: 38026.4 Da    PI: 7.1516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002941-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13185231455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h + Er+RR+++N++f  L+ +lP+       K +Ka+iL +A e+IksL+
  BGIOSGA002941-PA 185 QHTMSERKRREKLNDSFVALKAVLPTG-----SKKDKASILIRAREHIKSLE 231
                       599***********************6.....499***************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.65E-15179235No hitNo description
SuperFamilySSF474593.14E-17181249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.25181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-17184249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11185231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-14187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146864.64E-4222250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDSSSWIHGY TNANATGANS GFMCGYAASP VEFPQQQQLI SMQMGMDDES AVYDGASMVG  60
DLLMASSSAH HAGAGSFQYS SSTTSSSASF RSASVSCIPE SSAAAAPELP AATGGAFSRY  120
ARHLRPRRPP KPGACGQRMF KTAMSVLANM HVAATYRRQY YYQQAAAAAA AAEAAAAPPS  180
DNQLQHTMSE RKRREKLNDS FVALKAVLPT GSKKDKASIL IRAREHIKSL ESKLSELEEK  240
NRELEARLAS RPAAKNDKGE TAAAEAGDET KREDLVEIEV TTTSGGSGVA DAAATGGDQE  300
TCCTLNVDLR GGGGGGMSTT DVVLRTLQCL REQIGDGASL VAMSTSAGSG GRPPSANLTL  360
QLKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRE
2190195RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.327701e-159callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977197121e-159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879409.10.0uncharacterized protein LOC107280684 isoform X2
TrEMBLA2WLN80.0A2WLN8_ORYSI; Uncharacterized protein
STRINGONIVA01G07090.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-14bHLH family protein