PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000276-PA
Common NameOsI_04880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 727aa    MW: 75883.4 Da    PI: 7.0184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000276-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18537633295
                       EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       +kvl++sdv+++gr+vlpkk ae h  ++k++ ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fv++n+L+egDf+v++  ++ +
  BGIOSGA000276-PA 537 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGVSIPMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDiK 626
                       79*************************999***********7777*******99777777777777.********************..6668 PP

                       EE..EEE CS
                B3  89 efelvvk 95 
                       +++++++
  BGIOSGA000276-PA 627 SGKYLIR 633
                       8877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-27527642IPR015300DNA-binding pseudobarrel domain
CDDcd100151.29E-31534635No hitNo description
SuperFamilySSF1019369.55E-22535629IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.278536638IPR003340B3 DNA binding domain
SMARTSM010191.9E-16536638IPR003340B3 DNA binding domain
PfamPF023623.2E-15537632IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MDASAGSSAP HSHGNPGKQG GGGGGGGRGK APAAEIRGEA ARDDVFFADD TFPLLPDFPC  60
LSSPSSSTFS SSSSSNSSSA FTTAAGGGCG GEPSEPASAA DGFGELADID QLLDLASLSV  120
PWEAEQPLFP DDVGMMIEDA MSGQPHQADD CTGDGDTKAV MEAAGGGDDA GDACMEGSDA  180
PDDLPAFFME WLTSNREYIS ADDLRSIRLR RSTIEAAAAR LGGGRQGTMQ LLKLILTWVQ  240
NHHLQKKRPR TAIDDGAASS DPQLPSPGAN PGYEFPSGGQ EMGSAAATSW MPYQAFTPPA  300
AYGGDAMYPG AAGPFPFQQS CSKSSVVVSS QPFSPPTAAA AGDMHASGGG NMAWPQQFAP  360
FPVSSTSSYT MPSVVPPPFT AGFPGQYSGG HAMCSPRLAG VEPSSTKEAR KKRMARQRRL  420
SCLQQQRSQQ LNLSQIHISG HPQEPSPRAA HSAPVTPSSA GCRSWGIWPP AAQIIQNPLS  480
NKPNPPPATS KQPKPSPEKP KPKPQAAATA GAESLQRSTA SEKRQAKTDK NLRFLLQKVL  540
KQSDVGSLGR IVLPKKEAEV HLPELKTRDG VSIPMEDIGT SQVWNMRYRF WPNNKSRMYL  600
LENTGDFVRS NELQEGDFIV IYSDIKSGKY LIRGVKVRRA AQEQGNSSGA VGKHKHGSPE  660
KPGVSSNTKA AGAEDGTGGD DSAEAAAAAA AGKADGGGCK GKSPHGVRRP RQEAAAAASM  720
SQMAVSI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.73600.0callus| flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329838280.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1054410.0AK105441.1 Oryza sativa Japonica Group cDNA clone:001-125-A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629311.10.0PREDICTED: B3 domain-containing protein VP1 isoform X1
SwissprotP373980.0VIV_ORYSJ; B3 domain-containing protein VP1
TrEMBLA2WY760.0A2WY76_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA000276-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-61B3 family protein