PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G09150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 424aa    MW: 46132.8 Da    PI: 4.5769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G09150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.8e-12223270355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++++ f  L++++P+        K++Ka+iL +++ Y+k+L+
  ORUFI11G09150.1 223 KNHVMSERRRREKLKEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 270
                      5899***********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.339220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-17223291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-14223274No hitNo description
PfamPF000103.6E-9224270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16224281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-14226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MYDDNGAADL PTSQSASIKV SEDPALVDRI TASLWDTPPR AAFSSEAGVA DIVVFEDLDH  60
GNTAVEATTT MVPGEPEPHA VAGGEVAECE SNAHNDLEQI TMDDIGELYS LCEELDVLDD  120
DSSSWVADPW SSFQLVPTAE ATDVDDAVVA ALGAIDGSCR PSPSSFVAWK RTPDSDEVQA  180
VPLISGEPPQ KLLKKAVAGA GAWMNNADGS AATMTTDQGS SIKNHVMSER RRREKLKEMF  240
LILKSVVPSI HKVDKASILA ETIAYLKELE KRVEELESSS QPSPRPMETT RRRCCKSTGK  300
KVSAGARAKR KAPAPEDTDG ERRHCVSNVN VTIMDNKELL LELQCQWKEL LMTRVFDAIK  360
GVSLDVLSVQ ASTSDGLLGL KIQATWTEDT SLRSSSQRLR ARSRYAASSI YLSINHSIYV  420
YLEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233ERRRRE
2229234RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453640.0AC145364.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0062D09, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616671.10.0anthocyanin regulatory Lc protein
SwissprotP135265e-75ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0E0R6K10.0A0A0E0R6K1_ORYRU; Uncharacterized protein
STRINGORUFI11G09150.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.36e-19bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]