PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G18080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 264aa    MW: 27264 Da    PI: 6.0301
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G18080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP45.82.4e-145514735115
              TCP  35 LqdeLGfdkdsktieWLlqqakpaikeltgtssssa............sec.eaesssssasnsssg.....kaaksaakskksqksaasalnl 110
                      L++eLG+++ds+ti W +qq++pai+ +tg ++ +a            +e+ +a++          g     k++++ ++++ +++++ +al++
  ORUFI09G18080.1  55 LTRELGHKSDSETIRWFMQQSEPAIDTATGMGTVPAittivdgilripTESpSAVAAAAR------GdeptpKRRSKLQPTRAATDDPVEALAM 142
                      9******************************77666333332222211111111111111......1223423333333666666666666777 PP

              TCP 111 akesr 115
                      a+  r
  ORUFI09G18080.1 143 AHPPR 147
                      77666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-955108IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSSNRKTSSL LISFRRSGQA GAAAQRVGRR ARRRRDGGGG ANSGDKLDCE TIRWLTRELG  60
HKSDSETIRW FMQQSEPAID TATGMGTVPA ITTIVDGILR IPTESPSAVA AAARGDEPTP  120
KRRSKLQPTR AATDDPVEAL AMAHPPRGLA PASSATPPTA TGGGAIPFIA MPATSDGGKQ  180
AMSPATVWMV PPGGAGAVNQ PIQYWAFQPN PDHANFAGAS SYNVGQNPGV HEASAADHAA  240
STGGGGGGED DEYEGMTDSS SDEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12835RRARRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064600.0AL606460.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankBX8426050.0BX842605.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612634.11e-104transcription factor PCF2-like
SwissprotA2YXQ11e-37PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-37PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A0E0QTZ30.0A0A0E0QTZ3_ORYRU; Uncharacterized protein
STRINGORUFI09G18080.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-18TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]