PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G23530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 396aa    MW: 41340.8 Da    PI: 5.2898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G23530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09205252455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  ORUFI08G23530.1 205 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 252
                      8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16199266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-10199256No hitNo description
PROSITE profilePS5088815.301201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-16201264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6205252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDGGRVGGDY ISSLLSSSPR LDFGVPVLDA VVAPGGGGGG GDCGLDKLCG DPGFAERAAR  60
LSSFNNGGGG VGQRYGGAGA GLFGMPPPAP GDFAGGGSRE ASSVSDPASS AMKDAAATAA  120
AAAKGKGKEP PVGEEKESDG KRCKTGNGEK ESSVKPKAEQ AGSDSSVEDG GGGGQKQGKG  180
KNAKPVEPPK DYVHVRARRG QATDSHSLAE RVRRERISQR MKVLQDLVPG CNKVIGKALM  240
LDEIINYVQS LQRQVEFLSM KLATVNPLDF SNLPTLLQKD MFQACGPSAS SVFSLESSNS  300
AFPFAEQGDV FQQFAQNSME SQCTLNQLDL ALSQATNAAQ YAFQDGTAGA NLQQRNFWED  360
DLQSVFHIEN GQSQENGVSA PNFHGQLQAG HMKMEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992910.0AK099291.1 Oryza sativa Japonica Group cDNA clone:J023127C06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648582.10.0transcription factor BHLH094-like
TrEMBLA0A0E0QLF00.0A0A0E0QLF0_ORYRU; Uncharacterized protein
STRINGORUFI08G23530.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-53bHLH family protein