PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G22550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 340aa    MW: 36915.7 Da    PI: 7.2318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G22550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.12.4e-51251551128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrFhPtdeelv++yL++kv +  +    v i+evd++++ePw+Lp++++ +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+e +
  ORUFI08G22550.1  25 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-GVdIAEVDLNRCEPWELPEAARMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREGV 117
                      79*************************888.455***************9888999***********************************988 PP

              NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++   +g+l+g+kktLvfykgrap+gekt+Wv+heyrl
  ORUFI08G22550.1 118 AAaaaGGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 155
                      877888999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6114178IPR003441NAC domain
PROSITE profilePS5100558.19825178IPR003441NAC domain
PfamPF023653.7E-2726155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGDALWEMLG EEMAAAAAAA GEHGLPPGFR FHPTDEELVT FYLAAKVFNG ACCGGVDIAE  60
VDLNRCEPWE LPEAARMGEK EWYFFSLRDR KYPTGLRTNR ATGAGYWKAT GKDREGVAAA  120
AAGGALIGMK KTLVFYKGRA PRGEKTKWVL HEYRLDGDFA AARRSTKEEW VICRIFHKVG  180
DQYSKLMMMK SPASYYLPVS HHHPSSIFHD LPPVPFPNPS LVPFHHDLPT SFHPPLLQHS  240
HANSKNSSSN NGGFVFPNEP NTTNSSDNHI SCNGAMAAAA AAAFPSFSCA STVTGKGGPP  300
AQLGVNAGQQ EPPPPTWMDA YLQHSGFIYE MGPPAVPRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-492517817165NO APICAL MERISTEM PROTEIN
1ut4_B8e-492517817165NO APICAL MERISTEM PROTEIN
1ut7_A8e-492517817165NO APICAL MERISTEM PROTEIN
1ut7_B8e-492517817165NO APICAL MERISTEM PROTEIN
3swm_A9e-492217817168NAC domain-containing protein 19
3swm_B9e-492217817168NAC domain-containing protein 19
3swm_C9e-492217817168NAC domain-containing protein 19
3swm_D9e-492217817168NAC domain-containing protein 19
3swp_A9e-492217817168NAC domain-containing protein 19
3swp_B9e-492217817168NAC domain-containing protein 19
3swp_C9e-492217817168NAC domain-containing protein 19
3swp_D9e-492217817168NAC domain-containing protein 19
4dul_A8e-492517817165NAC domain-containing protein 19
4dul_B8e-492517817165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060490.0AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648828.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8515e-85NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0E0QL330.0A0A0E0QL33_ORYRU; Uncharacterized protein
STRINGORUFI08G22550.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.18e-81NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]