PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G12040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 447aa    MW: 49725.8 Da    PI: 4.574
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G12040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.33.1e-1991411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 
                      l+pGf+F+P+de+lv+++L + +++ +++l   + + d  +v Pw+L  ++ +++e++ yf +++d +     r+ r+ +  +g+W ++  +++
  ORUFI08G12040.1   9 LTPGFKFEPSDEQLVQFFLLPYLRELPVPLGGLVIRDDPRSVPPWKLFaRNGRGDEEDAYFLAPADGEG----RQARTCDggRGRWITQRLERT 98 
                      579***************************8888888**********8334445666779988887753....555543323899**9999998 PP

              NAM  92 vlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +       ++++v  k+ L ++ g+ + g +t Wvmhey++
  ORUFI08G12040.1  99 GNLRlaggggsGEAVVFEKHRLNYHAGEGRCG-STGWVMHEYAV 141
                      8887889888777789*********9999997.9********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-273159IPR003441NAC domain
PROSITE profilePS5100525.0349159IPR003441NAC domain
PfamPF023653.7E-1411140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAAAKMAGLT PGFKFEPSDE QLVQFFLLPY LRELPVPLGG LVIRDDPRSV PPWKLFARNG  60
RGDEEDAYFL APADGEGRQA RTCDGGRGRW ITQRLERTGN LRLAGGGGSG EAVVFEKHRL  120
NYHAGEGRCG STGWVMHEYA VVKPAALGAR HRACHIAFTG HGQKRKRVPD GYVDVEDDGS  180
KASTNAAAAV PPSSTAAMSA CPSNVTYNQG CHISPEQSIE QHFPAEHNNI QIQQQAYYQS  240
QDHEQCQYSD EEKYLLQQIK QEQYYYNQQN CFLPGQGNQE LYYNDEQQQI FSLPEHQCSQ  300
EQYCHHDDQQ DCVLPEQHSQ ELHGYNNEEQ GYLLPPEPID QEEQALFVGG EPQHEQQPLT  360
STPRQALLDY DDGKLLPPVG VNGAIAIPPQ DAAVASNDDD GGQATEAPAA KMTAEEKKWF  420
MEELLTEGCW SGPLLFDQPY YGSALKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047590.0AP004759.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0670E08.
GenBankAP0054900.0AP005490.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0049I01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649258.10.0uncharacterized protein LOC107275324
TrEMBLA0A0E0IAC20.0A0A0E0IAC2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QHF30.0A0A0E0QHF3_ORYRU; Uncharacterized protein
TrEMBLA2YTZ70.0A2YTZ7_ORYSI; Uncharacterized protein
TrEMBLA3BRY80.0A3BRY8_ORYSJ; Os08g0327800 protein
STRINGORUFI08G12040.10.0(Oryza rufipogon)
STRINGONIVA08G11510.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.13e-10NAC domain containing protein 53