![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI08G11050.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 404aa MW: 45015.4 Da PI: 6.0906 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.2 | 7.6e-17 | 229 | 273 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+i n r v fskRr+ ++KKA+ELS+LC+++vav ++s+ gk ORUFI08G11050.3 229 KPIANRKARDVCFSKRRQVVIKKANELSILCGVNVAVAVLSPAGK 273 6899**************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.79E-21 | 221 | 295 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-22 | 221 | 280 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.983 | 221 | 281 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 9.08E-22 | 222 | 278 | No hit | No description |
PRINTS | PR00404 | 1.5E-13 | 223 | 243 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-19 | 231 | 276 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-13 | 243 | 258 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-13 | 258 | 279 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 404 aa Download sequence Send to blast |
MYSSETGAWS TPVVLDDGLD SWEQRWRDAQ SRGEFYRVPY VMPRRVALVG DEIYFTLRED 60 NAIIKYNWGM HCLSEIDSLS PDVYGIALME MENGSLGFAC IEDSSLYVWS RKVNSEGAAE 120 WVQCRVIKLD KMIPVANLSD EAFVVGSGEG MGAIFVSTGV GLFTIELKSR RVKKVAEPEV 180 YFSILPYMSF YTPALQEWAN YRNKHQHADE AMKAQVIVKA MRRGKVKIKP IANRKARDVC 240 FSKRRQVVIK KANELSILCG VNVAVAVLSP AGKPFFFGCP TVQAVTRRLL GVGPSNPTMG 300 DGGNGDETDI VHELNLKYQK LQQENEVEKK KNQRGQDVRL ASDVNALGLH ELEAFDSNLN 360 VIDDIVDSND VVKNAKQTAE PQTQMSVAST LQFMLDGQSI APSL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK107112 | 0.0 | AK107112.1 Oryza sativa Japonica Group cDNA clone:002-123-A07, full insert sequence. | |||
GenBank | AP004458 | 0.0 | AP004458.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0045D08. | |||
GenBank | AP005819 | 0.0 | AP005819.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0063H21. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY360394 | 0.0 | AY360394.1 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0QH28 | 0.0 | A0A0E0QH28_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G11050.3 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23101 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34440.1 | 5e-18 | AGAMOUS-like 29 |