PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G05340.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 419aa    MW: 42579.6 Da    PI: 6.5503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G05340.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000233023411054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + R +++ ++   L++l+ +      +K + a++L +++eYIk L
  ORUFI08G05340.2 302 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 341
                      556667777777888888887.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-12291361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.351292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-5295345No hitNo description
Gene3DG3DSA:4.10.280.109.2E-9297363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-4298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MADHQEMIHA AAAPAMYGGG GGAAAGGATT TTGSHGGGGG DWWSAAVSSC SAPAPETMQG  60
FGGWSAAVVA VDGGGNTSRS AAGNTASSES PGSLATGSSI TFQEPAGGVA DPAAIAVHAQ  120
TVAGGGGGGW NQQPFLDGSG FHGYMSSSRN DHHTNHHHHQ INTPSLMSNS SSNNGVMLQE  180
HQHDQNYQFL SNLGFELLSS PTSPYGGGGG FRSSLLRSLT EPAAAAKPND SPGFQQYHHH  240
QPAMNLQPPA AAAGREPLQF TNSTAAPFWN PSSGFTVAAE GTALGGAGAS PAQPTPASLA  300
AKVRKEKLGD RVTALQQLVS PFGKTDTASV LHETIEYIKF LHDQVGALSA PYLKNRQQVP  360
HLKNSTGVDN DGGGGGEATA ASKRDLTGRG LCLVPISSTF AVASETPVDF WTPFGAAFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA0A0E0QF500.0A0A0E0QF50_ORYRU; Uncharacterized protein
STRINGONIVA08G04680.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-36bHLH family protein