PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G24160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 261aa    MW: 29367.9 Da    PI: 7.3047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G24160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12e-053583153
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                     +r  ++erE+  Rd+ N+ f+eL  ll ++     + + Ka +L ++++ +k+
  ORUFI07G24160.1 35 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACVLSETTRILKD 83
                     68899**********************997....4556666677666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-831103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1131103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.47E-43289No hitNo description
PROSITE profilePS5088811.233484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVPRDRVNAA AGGGVEGRLV QSGIVNKKCD KKAPKRIHKS EREKLKRDKQ NDLFNELGNL  60
LEPDRQNNGK ACVLSETTRI LKDLLSQVES LRKENSSLKN ESHYVALERN ELHDDNSMLR  120
TEILELQNEL RTRMEGNPVW SHVNTRPALR VPYPTTGVFP VQHLPHLPVT TTGAFPQQQP  180
VIIEQHYAAT PRELQLFPES ATSEDSEPSQ EHGISDHVTR PQPRYPTPTA TLPVNLFPVL  240
PGRQDQQCSS GTSDEDRIGR S
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709630.0AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence.
GenBankHQ8588560.0HQ858856.1 Oryza sativa Japonica Group isolate UT1619 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645391.11e-180transcription factor BHLH062-like
RefseqXP_015645393.11e-180transcription factor BHLH062-like
SwissprotQ69V100.0BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A0E0QBK60.0A0A0E0QBK6_ORYRU; Uncharacterized protein
STRINGORUFI07G24160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-36bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]