PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G22420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 325aa    MW: 34335.6 Da    PI: 8.7023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G22420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.6e-09156203455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  ORUFI06G22420.1 156 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 203
                      8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014473.66E-592102No hitNo description
CDDcd000831.41E-9150207No hitNo description
SuperFamilySSF474592.75E-15150221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14152220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF1014473.66E-5283302No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MRHHSPPPPP DLSSAVGEIH PPLASAARSS SNGGGSGGSF TALLGLPTSQ AMELLLPTAA  60
ASAPPPPPAF PADPHLVDRA ARFSAFASPS PPSPPPPPPP PPSSSSKRKP DPASKGKAAA  120
KKGKTAASGE DGGDGGEDEK PAYVHVRARR GQATDSHSLA ERARREKINA RMELLKELVP  180
GCSKVSGTAL VLDEIINHVQ SLQRQVEYLS MRLAAVNPRV DFGGLDNFLT TECGRITGLN  240
YKNGMDLEQV TWPDMGVHGA RNLMQLQQQF WHGDLAHPLQ PPSQWEKRTD TNPPVFSNSS  300
SSLFGYDLAS SGAPAQTGNK LKTEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709700.0AK070970.1 Oryza sativa Japonica Group cDNA clone:J023066J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641463.10.0transcription factor bHLH48 isoform X2
SwissprotQ8VZ025e-62BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A0E0Q0460.0A0A0E0Q046_ORYRU; Uncharacterized protein
TrEMBLB9FU490.0B9FU49_ORYSJ; Uncharacterized protein
STRINGORUFI06G22420.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.25e-51bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]