PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G19520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 518aa    MW: 56792.1 Da    PI: 9.7728
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G19520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.97.4e-31542301128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                      lp+G++F+Ptd+el+ e+L++kv+          ++++   i+   +i++++P++Lp  v+++  + +fF++ +k+y+tg+rk+r+        
  ORUFI06G19520.1  54 LPAGVKFDPTDQELI-EHLEAKVRPGGeaaahplIDEFIPtIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqppaaaa 145
                      799************.99*****988856665543333333766646**********.556667799******************88******* PP

              NAM  78 .................................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                                        ++ +W++tgk+++v+  +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  ORUFI06G19520.1 146 ssggaggnasssssasaaaavarhghqqqqqqqRSETRWHKTGKTRAVVG-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 230
                      ****************************9998755789***********9.99************5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-3548138IPR003441NAC domain
PROSITE profilePS5100526.38454249IPR003441NAC domain
PfamPF023651.1E-1455230IPR003441NAC domain
SuperFamilySSF1019414.58E-35184249IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDGVVAEDQA GGSGSGHRRL IGSRIEEHRK YMSEESCCPR CGHKIDRKLD WVGLPAGVKF  60
DPTDQELIEH LEAKVRPGGE AAAHPLIDEF IPTIEGEDGI CYTHPEKLPG VSKDGLSRHF  120
FHRPSKAYTT GTRKRRKIQP PAAAASSGGA GGNASSSSSA SAAAAVARHG HQQQQQQQRS  180
ETRWHKTGKT RAVVGGGRQR GCKKILVLYT NFGKHRKPEK TNWVMHQYHL GEAEEERDGE  240
LVVSKIFYQT QPRQCAAADA AATASASAVD RRTTSLRDRA AAAAAAAAAA APMASANVSV  300
AAFHGGAAGI DEFSFAQFRS SFEEAGMGAS SSDHQSAMVD QRRRQQQHDD DEHDHRRGGG  360
GHHYVGQQQS VAATFHVVSS PADPIARLMS PPPAHQGTVM LRQPEPPYIY HHQEDERPHQ  420
PRKFDGRSTS GSGLEEVIMG CTSRRSKGGE TSGGKDGTEW QYPSFWPSDS QDHHGWKFHL  480
SAQIYMSKET KMILKQSKRE RQKKKKERKN KGDITRKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1499505ERQKKKK
2500506RQKKKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037130.0AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641895.10.0NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F81e-118NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0E0PZ540.0A0A0E0PZ54_ORYRU; Uncharacterized protein
STRINGORUFI06G19520.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-101NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]