PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G14140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 141aa    MW: 15639.9 Da    PI: 10.7387
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G14140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.11.1e-0828532348
                     HHHHHHHHHT-EEEEEEE-TTSEEEE CS
           SRF-TF 23 KAeELSvLCdaevaviifsstgklye 48
                     KA+ELS+L++a vav++fs+ ++ y+
  ORUFI06G14140.1 28 KASELSILTGAAVAVLVFSEANRPYT 53
                     9*******************998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-41057IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-71158IPR002100Transcription factor, MADS-box
PfamPF003191.8E-82853IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.3492858IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MVHPRGRPSK GRQAIGIRRI EDKPGGTKAS ELSILTGAAV AVLVFSEANR PYTLTDPSSS  60
LVDDAPLLRA RPRVHDCEPE ALRRAADEAK VEVARLRDVA GRRFWWWWEA TNVEALGEAE  120
LPEFARALGR VRAAVVRRHA L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036191e-169AP003619.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0577H07.
GenBankAP0043251e-169AP004325.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1230_H04.
GenBankAP0149621e-169AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882204.16e-57uncharacterized protein LOC112939359
TrEMBLA0A0E0PXA22e-94A0A0E0PXA2_ORYRU; Uncharacterized protein
STRINGORUFI06G14140.13e-95(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1817844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28460.12e-08AGAMOUS-like 59