PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G25940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 414aa    MW: 42231.8 Da    PI: 6.4012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G25940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.3e-06310350954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  ORUFI05G25940.1 310 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 350
                      599*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.259301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-12307359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.14E-10307355No hitNo description
SMARTSM003532.2E-11307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9310358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGNGA AGAVRSDDAY  60
GLDVDLPSHQ MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDVGLLD  120
RFAFPNVAET TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT  180
ALPPSKRKLP EKYPVVGTSP TTKTTTTSET AAERRSTKRG AGGSSSITFG GGCHGAGAAA  240
ALLGLGRGYE PDTEAIAQVK EMIYRAAAMR PVTLGGAASA SDPSSAAPPP PQRPRRKNVR  300
ISSDPQTVAA RLRRERVSER LRVLQRLVPG GSKMDTATML DEAASYLKFL KSQLEALETL  360
GNGNGNGNLL HHGYYTGSRN ATATAATGSS NSTVLAFGRD GLAGFVKSNR NLQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292296RPRRK
2310315RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638480.10.0transcription factor LATE FLOWERING
SwissprotA0A0P0WQ900.0LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLA0A0E0PQK60.0A0A0E0PQK6_ORYRU; Uncharacterized protein
STRINGORUFI05G25940.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-27bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]