PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G23910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 342aa    MW: 35317.2 Da    PI: 7.4365
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G23910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.13.4e-30102204389
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++    +++ + +a++s ++        
  ORUFI05G23910.1 102 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPH----DHDLVAAAASSMAPppfanggd 191
                      78*************************************************************99999....2222222221111122222334 PP

              TCP  89 ............k 89 
                                  +
  ORUFI05G23910.1 192 ghhgasassmleD 204
                      4443333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-26103165IPR005333Transcription factor, TCP
PROSITE profilePS5136929.959103161IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MACMAGVDSR GGEALSLAAV CCSTVAAAAC ATVPLNSFSF RSNHEQLKMI SNNSTNEELG  60
GGGRKAADQP SGGGGAAAAV ASSRHWSAST ESRIVRVSRV FGGKDRHSKV RTVKGLRDRR  120
VRLSVPTAIQ LYDLQDRLGL SQPSKVVDWL INAAQAEIDK LPPLQFPPHD HDLVAAAASS  180
MAPPPFANGG DGHHGASASS MLEDGDKAAG GGGMKAFMSL SNSLGLLNAA TMPATLAAHH  240
HHHHHAAAYY AAAESWGNGG NGGHHHDVSH GVSPSAHNSP FPSLLSLAPG SHHQFVFYSP  300
EGGGFAVKEA AAEQFPVDSL DHSQGQLTLS SARSFLHSGS QG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306040.0AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637968.10.0PREDICTED: transcription factor TCP13
TrEMBLA0A0E0PPW10.0A0A0E0PPW1_ORYRU; Uncharacterized protein
STRINGLOC_Os05g43760.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5