PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G06530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 338aa    MW: 37289.3 Da    PI: 9.681
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G06530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.64.9e-36481901128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 
                      +p+G+rF+Ptd+el+ e+L++kv++        ++++ + i+   +i++++P++Lp  v+ +  + +fF++++k+y+tg+rk+r+        +
  ORUFI05G06530.1  48 MPAGVRFDPTDQELI-EHLEAKVKDGGstshplIDEFIHtIQGEdGICYTHPENLP-GVTRDGLSKHFFHRSAKAYPTGTRKRRKaskgrnvaA 139
                      699************.99******9987777664443344777756**********.555666799******************7577777665 PP

              NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      ++ +W++tgk++++++ +g+ +g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  ORUFI05G06530.1 140 AETRWHKTGKTRAITV-RGQPKGCKKILVLYtsFGKKRKAEKTSWVMHQYHL 190
                      5888************.999***********55589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-3740209IPR003441NAC domain
PROSITE profilePS5100533.1948209IPR003441NAC domain
PfamPF023653.5E-1749190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSSDGASGSI GMKHDDGDHR PITGASSRRC PSCGHDPDCN KPFDMVGMPA GVRFDPTDQE  60
LIEHLEAKVK DGGSTSHPLI DEFIHTIQGE DGICYTHPEN LPGVTRDGLS KHFFHRSAKA  120
YPTGTRKRRK ASKGRNVAAA ETRWHKTGKT RAITVRGQPK GCKKILVLYT SFGKKRKAEK  180
TSWVMHQYHL GELDDEKEGE LILSKVFYQT QTRSAAAAEA PVSSGAASME VQGQQLQQQV  240
LKLQADDGHF SSAPTKKRLH QDVVAQVKVD RGHHCMPAQR QVKFNLKVTP VPTTSSFPVV  300
IDKQLEELQF ISPKRQIGLT SAGLLTTKIN MDNFLDSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-144619013140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422270.0AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence.
GenBankJQ0880960.0JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637950.10.0NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F86e-91NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0E0PIK80.0A0A0E0PIK8_ORYRU; Uncharacterized protein
STRINGORUFI05G06530.20.0(Oryza rufipogon)
STRINGONIVA05G06750.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-83NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]