PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G18350.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 242aa    MW: 26314.2 Da    PI: 8.9658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G18350.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12170215655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+ l+P+     +k  s +++L +Av++Ik Lq
  ORUFI04G18350.2 170 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 215
                      689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-16167230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-12168219No hitNo description
Gene3DG3DSA:4.10.280.103.7E-14169229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9170215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MFDGSFSSSA RPAGSSLGEV RHGAMSSSSN NKKKMKAPLS FASSRQGSGG LSQISEDGIP  60
DLTDSIHGAA HHHGRSEENV STHDHVVRSF SSGGFSIGSW EDSNSIVFST STGKSGAHGN  120
DDIIATLSNY ESQLVAPREM AGVEKYLQMQ HDQVPFRVRA KRGCATHPRS IAERERRTRI  180
SEKLRKLQAL VPNMDKQTST SDMLDLAVDH IKGLQSQLQT LKEDKEKCTC SCKQASRNRP  240
AD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680390.0AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636683.11e-174transcription factor bHLH129
SwissprotQ8H1021e-45BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0E0PAV51e-179A0A0E0PAV5_ORYRU; Uncharacterized protein
STRINGORUFI04G18350.11e-173(Oryza rufipogon)
STRINGOBART04G16900.11e-174(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]