PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G09760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 419aa    MW: 43308.4 Da    PI: 6.5847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G09760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10247294455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  ORUFI04G09760.1 247 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 294
                      8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17241312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.97E-11241298No hitNo description
PROSITE profilePS5088815.612243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16243311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-7247294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MADEHFFPAG DYFSTSSSGA GTGGAGALLP AAAYGTMTMM PPWAVAAAEQ MMMMAPAAAA  60
AEFDSALSSL VSSPQGGGGG DEMAAIGDLI GRLGSICSHG GASANNSCYS TPLSSPPRAP  120
PPPPFRGYAA AGGRLSRVSS SKSLGGAAAA LDSSEADMNP TTAAAADQPS KPSAAAARKR  180
KSSAKPKASS SSLPTATATT NASPKRSKVA AGAGDDGDGD ADAAEEKPEP AKDYIHVRAR  240
RGQATDSHSL AERVRRERIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV QSLQRQVEFL  300
SMKLATMNPQ LDFDSHYMPS KDMSHMPVPA YPSSDPTTTT AFSYTGSPAT ADPFTVYNCW  360
ELDLHTAMQM GATTGLSQDG PIATMAPSPS PLPHHPPLHG FYGGQQQQGT TVNHMKAEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO6813950.0FO681395.1 Oryza rufipogon (W1943) Awn-1(An-1) full-length cDNA sequence: OR_W1943_cDNA_An-1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635665.20.0LOW QUALITY PROTEIN: transcription factor bHLH62
SwissprotQ9SRT26e-63BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A0E0P7Q20.0A0A0E0P7Q2_ORYRU; Uncharacterized protein
STRINGORUFI04G09760.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]