PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G04370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 183aa    MW: 18788 Da    PI: 6.9728
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G04370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.22.6e-3351130378
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaess 78 
                       k  ++s++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++       +ss
  ORUFI04G04370.1  51 RKSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAPpaavAIGSS 130
                      577899*********************************************************66666333222211222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-2855130IPR005333Transcription factor, TCP
PROSITE profilePS5136925.84856110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MASSSDLILY NLVPAQPLNP SAIPNPNPDL SIAAAEPPSS DGATPRRVRP RKSPSSSDRH  60
SKVAGRGRRV RIPAMVAARV FQLTRELGHR TDGETIEWLL RQAEPSIIAA TGTGVTPEEA  120
PPAAVAIGSS SVAAAAAAAG HGGAFVHVPY YTALLMQPPN ADEPPMASAA SASGTTAADE  180
NNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14551RRVRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAL6629650.0AL662965.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence.
GenBankAL6070080.0AL607008.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633587.11e-126PREDICTED: transcription factor PCF1
SwissprotO238751e-127PCF1_ORYSJ; Transcription factor PCF1
TrEMBLA0A0D3FSW41e-127A0A0D3FSW4_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZHC31e-127A0A0D9ZHC3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GXY21e-127A0A0E0GXY2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P5Q71e-127A0A0E0P5Q7_ORYRU; Uncharacterized protein
TrEMBLI1PJA91e-127I1PJA9_ORYGL; Uncharacterized protein
STRINGORGLA04G0027800.11e-127(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141722627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.18e-28TCP family protein