PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G35260.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 372aa    MW: 40358.9 Da    PI: 4.6126
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G35260.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.81.4e-27541402101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d+ ++++isw   gnsfvv+d + fa  +Lp+yFkhsnf+SFvRQLn+Y    v+ ++         weF+++ F +gkkell+
  ORUFI03G35260.3  54 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTY----VDPDR---------WEFANEGFLRGKKELLK 134
                      9**********************************************************....55555.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +ikr++
  ORUFI03G35260.3 135 TIKRRR 140
                      ****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-3050139IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-3050139IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-4950139IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-2454139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-135477IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-1392104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-13105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MNPLRVIVKE EELDFAAAAA AAAAGEGSPS SWAVGVMDLP RPMEGLGEAG PPPFLCKTYE  60
VVDDPGTDTV ISWGFAGNSF VVWDANAFAA VLLPRYFKHS NFSSFVRQLN TYVDPDRWEF  120
ANEGFLRGKK ELLKTIKRRR PPPSSPPSSS SSSSSSQHQQ QPAAACLEVG QFGRDGVVNR  180
LQRDKSVLIA EVVKLRQEQQ TTRAQMQAME ERISAAEQKQ QQMTVFLARA MKNPGFLQML  240
VDRQAGQHGA RNRVLEDALS KKRRRPIEYL LTRNGETCAA GESAAMLAAD GVAEPDGDTT  300
PRGDGGGGGG GDTESFWMQL LSLGLEEKQR EDGVAGGVQE SNSGGADVDN DEEDDDDDVD  360
VLVQSIYHLS PK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-243513910129Heat shock factor protein 1
5d5v_B2e-243513910129Heat shock factor protein 1
5d5v_D2e-243513910129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138LKTIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9981180.0AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds.
GenBankAY3444860.0AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds.
GenBankAY3324650.0AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628945.10.0PREDICTED: heat stress transcription factor A-2a
SwissprotQ84MN70.0HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A0E0P1680.0A0A0E0P168_ORYRU; Uncharacterized protein
STRINGBGIOSGA009826-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-86heat shock transcription factor A2