PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G35260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 403aa    MW: 43808.1 Da    PI: 5.0984
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G35260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.4e-34541442101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d+ ++++isw   gnsfvv+d + fa  +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkkell+
  ORUFI03G35260.1  54 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKELLK 138
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +ikr++
  ORUFI03G35260.1 139 TIKRRR 144
                      ****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.7E-3750143IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-3450143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5850143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-185477IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3054143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434093117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-18105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MNPLRVIVKE EELDFAAAAA AAAAGEGSPS SWAVGVMDLP RPMEGLGEAG PPPFLCKTYE  60
VVDDPGTDTV ISWGFAGNSF VVWDANAFAA VLLPRYFKHS NFSSFVRQLN TYGFRKVDPD  120
RWEFANEGFL RGKKELLKTI KRRRPPPSSP PSSSSSSSSS QHQQQPAAAC LEVGQFGRDG  180
VVNRLQRDKS VLIAEVVKLR QEQQTTRAQM QAMEERISAA EQKQQQMTVF LARAMKNPGF  240
LQMLVDRQAG QHGARNRVLE DALSKKRRRP IEYLLTRNGE TCAAGESAAM LAADGVAEPD  300
GDTTPRGDGG GGGGGDTESF WMQLLSLGLE EKQREDGVAG GVQESNSGGA DVDNDEEDDD  360
DDVDVLVQSI YHLSPNIKKV VPSSSNLGVL RGRSIRLHLY LVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-283514310129Heat shock factor protein 1
5d5v_B6e-283514310129Heat shock factor protein 1
5d5v_D6e-283514310129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142LKTIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9981180.0AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds.
GenBankAY3444860.0AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds.
GenBankAY3324650.0AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628945.10.0PREDICTED: heat stress transcription factor A-2a
SwissprotQ84MN70.0HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A0E0P1660.0A0A0E0P166_ORYRU; Uncharacterized protein
STRINGLOC_Os03g53340.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-91heat shock transcription factor A2