PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G28070.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 735aa    MW: 81012.9 Da    PI: 7.1844
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G28070.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR29.12.1e-094915171541
              TCR  15 kkYCeCfaagkkCseeCkCedCkNkee 41 
                      k YCeCfa++++Cse+C+C +C+N+++
  ORUFI03G28070.3 491 KSYCECFASKVYCSESCSCRGCFNDHS 517
                      99**********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163412.363483567IPR005172CRC domain
SMARTSM011141.1E-4484518IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.3E-6491515IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MGSETNKEGA RGGGQFEVVA TTCEVTIVVG CMKEMSAGQF YCKGEERVDG GAGIKRRGAP  60
QRKGDSPFLN FVKSLSPISS SQPLDAVPNL QMIKSSDLVH IPSIFTPPEE YFCKTLSRRL  120
VSLLSHDSNR KIKFIDRSLS QAYHDSPDNA SILPTNLAQR IQLSSDTLGS DKRHGIAGKT  180
DHETAQKHAK LSCFDQRCLD KMKQLTSGMN VQKRDLAKTH NDEITACDWD YLGTQYDSSV  240
VPESDLRFET AELLLETPKN GDAMPGKSFL PIVEANLENS RRKLFQGSAD CYSQSAVDNI  300
HAYCTSRGKE VATNHVSGIL PCPRESQLIP DHHFSDSLEV PSDYMAMNPS AVSQHLRGLH  360
RRSLFNDKVR DPTMGVQSVS NLGASTCATR HRSIPDDNYS KLVGSPVCAL PNVDLHLVRM  420
TEEMVPYNMT CTVNSTLSIS EHNTEISTVV PVNQLAPNTS EMNTHNQGDY SSQATMPTSA  480
GNSGQENPKR KSYCECFASK VYCSESCSCR GCFNDHSHEE TVLSTRNRIE SRNPLAFAPK  540
VIRTCGPGLE FGEDSNATPA SSRHKRGIER FETKEIERAD RKMKDHPKEE QSEMDKYHAL  600
CEIWGVRSTE NLFTTPSMDS RRAFALFPSE CPKSSLTSST RTSSHLHSPT RTDVLLSPFG  660
SYTQMLLGNE ASDMLLQQGD SSCTASLRIA SPNKKRVSPL RTGNTLSPTC RKELGLKSII  720
PPFPSLTGDA NSELQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205050.0AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879709.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A0E0NYM80.0A0A0E0NYM8_ORYRU; Uncharacterized protein
STRINGORUFI03G28070.30.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-30TESMIN/TSO1-like CXC 2