PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G28070.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 705aa    MW: 77752.3 Da    PI: 7.3795
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G28070.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR29.12e-094614871541
              TCR  15 kkYCeCfaagkkCseeCkCedCkNkee 41 
                      k YCeCfa++++Cse+C+C +C+N+++
  ORUFI03G28070.2 461 KSYCECFASKVYCSESCSCRGCFNDHS 487
                      99**********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163412.363453537IPR005172CRC domain
SMARTSM011141.1E-4454488IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.0E-6461485IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MGSETNKEGA RGGGQFEVVA TTCEVTIVVG CMKEMSAGQF YCKGEERVDG GAGIKRRGAP  60
QRKGDSPFLN FVKSLSPISS SQPLDAVPNL QMIKSSDLVH IPSIFTPPEE YFCKTLSRRL  120
VSLLSHDSNR KIKFIDRSLS QAYHDSPDNA SILPTNLAQR IQLSSDTLGS DKRHGIAGKT  180
DHETAQKHAK LSCFDQRCLD KMKQLTSGMN VQKRDLAKTH NDEITACDWD YLGTQYDSSV  240
VPESDLRFET AELLLETPKN GDAMPGKSFL PIVEANLENS RRKLFQGSAD CYSQSAVDNI  300
HAYCTSRGKE VATNHVSGIL PCPRESQLIP DHHFSDSLEV PSDYMAMNPS AVSQHLRGLH  360
RRSLFNDKVR DPTMGVQSVS NLGASTCATR HRSIPDDNYS KLVGSPVCAL PNVDLHLVRM  420
TEEMLAPNTS EMNTHNQGDY SSQATMPTSA GNSGQENPKR KSYCECFASK VYCSESCSCR  480
GCFNDHSHEE TVLSTRNRIE SRNPLAFAPK VIRTCGPGLE FGEDSNATPA SSRHKRGIER  540
FETKEIERAD RKMKDHPKEE QSEMDKYHAL CEIWGVRSTE NLFTTPSMDS RRAFALFPSE  600
CPKSSLTSST RTSSHLHSPT RTDVLLSPFG SYTQMLLGNE ASDMLLQQGD SSCTASLRIA  660
SPNKKRVSPL RTGNTLSPTC RKELGLKSII PPFPSLTGDA NSELQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205050.0AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879709.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A0E0NYM70.0A0A0E0NYM7_ORYRU; Uncharacterized protein
STRINGORUFI03G28070.30.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.15e-26Tesmin/TSO1-like CXC domain-containing protein