PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G11650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 410aa    MW: 43242.4 Da    PI: 5.4918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G11650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13202248354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  ORUFI03G11650.1 202 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 248
                      79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.022199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-11202248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15203270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15203269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-5212251No hitNo description
Gene3DG3DSA:3.30.70.2609.1E-5286336No hitNo description
CDDcd048734.65E-6286332No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGAHGDHRHH HHHQEAGVLV DEEEEEEVIE QACGGPTSGV VEQEVGGDGG GVCQDAAGMV  60
FEATSSVGSV SATMGPPPIM CWPPPAQPVH GAIHHHHNLG GGGGQQSPFF PLLPPLPPQP  120
PPPPPFFADF YARRALQYAY DHSGGASSSS DPLGLGGLYM GHHGSHVAGM MMPPPFAPSP  180
FGDLGRMTAQ EIMDAKALAA SKSHSEAERR RRERINAHLA RLRSLLPNTT KTDKASLLAE  240
VIQHVKELKR QTSEITEEAC PLPTESDELT VDASSDEDGR LVVRASLCCD DRTDLLPDLI  300
RALKALRLRA LKAEITTLGG RVKNVLVVTG DDSAAAAACA GTDGDGEQQE EAMQAPMSPQ  360
HTVASIQDAL RAVMERTASA TEESGGSGAG GGLKRQRTTS LSAILENRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066490.0AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649780.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y15e-75BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0E0NSR30.0A0A0E0NSR3_ORYRU; Uncharacterized protein
STRINGORUFI03G11650.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]