PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G09600.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 930aa    MW: 101038 Da    PI: 6.4654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G09600.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-11757805355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  ORUFI03G09600.2 757 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 805
                      58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500538.96188IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.901.1E-62099No hitNo description
PROSITE profilePS5018111.405337383IPR001810F-box domain
SuperFamilySSF813838.63E-14337406IPR001810F-box domain
Gene3DG3DSA:1.20.1280.504.7E-12340419No hitNo description
PfamPF129375.4E-6342384IPR001810F-box domain
SMARTSM002561.5E-5343383IPR001810F-box domain
SuperFamilySSF474595.37E-17752820IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.60E-11752809No hitNo description
Gene3DG3DSA:4.10.280.102.6E-17754821IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796754804IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-9757805IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10760810IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA  120
ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGDTK  180
REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQNWASGS FVPVSMKYTL  240
LELVEALPAV EEGMVAVLNY SLMGNFMMVY GHVPGATSGV RRLCLELPEL APLLYLDSDE  300
VSTAEEREIH ELWRVLKDEM CLPLMISLCQ LNNLSLPPCL MALPGDVKAK VLEFVPGVDL  360
ARVQCTCKEL RDLAADDNLW KKKCEMEFNT QGESSQVGRN WKERFGAAWK VSNNKGQKRP  420
SPFFNYGWGN PYSPHGFPVI GGDSDMLPFI GHPNLLGRSF GNQRRNISPS CSFGGHHRNF  480
LDTCGCMMCK CIYSDQRKDI VLADKYTCGN YMQKPVTQPG RWLIILVYHS LLCQYITIGL  540
SLLWYHLVDL GQPQRSKYKN PIRCQHTSAC RWQDAPAAGI HFDCIIPLPI NPYQLPPSAG  600
ACCSTTQASA SAKDGGNVLQ IPKPLEMYSP PCSAAASSQG HCFAVGANQL ASLDLAMDFD  660
EPILFPVHNA SLQEGIQFYN PTGDTQLSRN MSIDKCLKGS KRKGSGEGSS SLHSQEETGE  720
MPQRELSMEH AGEKAGDADA SREEYVHVRA KRGQATNSHS LAERFRREKI NERMKLLQDL  780
VPGCNKITGK AMMLDEIINY VQSLQRQVEF LSMKLSTISP ELNSDLDLQD ILCSQDARSA  840
FLGCSPQLSN AHPNLYRAAQ QCLSPPGLYG SVCVPNPADV HLARAGHLAS FPQQRGLIWN  900
EELRNIAPAG FASDAAGTSS LENSDSMKVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351570.0AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631331.10.0F-box protein SKIP22
TrEMBLA0A0E0NS120.0A0A0E0NS12_ORYRU; Uncharacterized protein
STRINGORUFI03G09600.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-45bHLH family protein