![]() |
Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI03G06720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 74aa MW: 7902 Da PI: 9.3793 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 38.7 | 3.7e-12 | 31 | 74 | 2 | 45 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkds 45 a +k ++++ h kv+ + R+R+ + aa +F+L +eLG+++d+ ORUFI03G06720.1 31 AIRKPPSKDCHNKVDALGCRIRMHIIYAAHIFQLNRELGHKSDG 74 689***************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 8.938 | 37 | 74 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-7 | 37 | 74 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 74 aa Download sequence Send to blast |
MTKVHGDGGG GAALDKQLVP NASNDNGTAL AIRKPPSKDC HNKVDALGCR IRMHIIYAAH 60 IFQLNRELGH KSDG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC210480 | 1e-97 | AC210480.2 Oryza glaberrima clone OG_BBa0067M08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629543.1 | 2e-25 | PREDICTED: transcription factor TCP21-like | ||||
Swissprot | Q9FTA2 | 4e-16 | TCP21_ARATH; Transcription factor TCP21 | ||||
TrEMBL | A0A0E0NQX0 | 6e-49 | A0A0E0NQX0_ORYRU; Uncharacterized protein | ||||
STRING | BGIOSGA005319-PA | 3e-23 | (Oryza sativa Indica Group) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP38180 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08330.1 | 2e-17 | TCP family protein |