PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G37320.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 262aa    MW: 26268.9 Da    PI: 7.3241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G37320.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.2e-07223248530
                      HHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                      h+++Er RR+ri +++  L+el+P+a
  ORUFI02G37320.3 223 HSIAERLRRERIAERMKALQELVPNA 248
                      99***********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-7216250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.49218262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-6220250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.80E-5222253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQPNARQMRG GGGGGGGGQD DFFDQMLSTL PAVWSELGSG KPAWDLTAGA VGGGGGASDD  60
HSAAAFDDSA LLASRLRQHQ IDGGGDKPIM LQLSDLHRHH GLAAGDDSGG AAGFLPLSLF  120
ADRSQDDIDA AFKSPNGARG DHALYNGFGA AGMHGAAAMQ PPPFGQGGSM PAQSFGGGAA  180
ASGGGGGGSA SAAAAAGASS GGGAAAPPRQ RQRARRGQAT DPHSIAERLR RERIAERMKA  240
LQELVPNANK VPRELNIKKG MD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039750.0AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBankAP0040940.0AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627343.11e-173transcription factor bHLH66
TrEMBLA0A0E0NM461e-180A0A0E0NM46_ORYRU; Uncharacterized protein
STRINGORUFI02G37320.11e-173(Oryza rufipogon)