PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G37320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 441aa    MW: 44306.1 Da    PI: 5.834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G37320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12223268555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  ORUFI02G37320.1 223 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 268
                      99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17216278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16220277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-13222272No hitNo description
PfamPF000103.0E-9223268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MQPNARQMRG GGGGGGGGQD DFFDQMLSTL PAVWSELGSG KPAWDLTAGA VGGGGGASDD  60
HSAAAFDDSA LLASRLRQHQ IDGGGDKPIM LQLSDLHRHH GLAAGDDSGG AAGFLPLSLF  120
ADRSQDDIDA AFKSPNGARG DHALYNGFGA AGMHGAAAMQ PPPFGQGGSM PAQSFGGGAA  180
ASGGGGGGSA SAAAAAGASS GGGAAAPPRQ RQRARRGQAT DPHSIAERLR RERIAERMKA  240
LQELVPNANK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GASAVAPLVA NMSSESNGNA  300
NATSSSGNGE AANGSSNGDN NGGGTLRVTE QQVAKLMEED MGSAMQYLQG KGLCLMPISL  360
ATAISSATSS SLLPRTGGGA GGSLHEGGNG TSPPLVNGTA TGCDDAGVFF SVKFVVELSF  420
LLLNEDCRGK EESKLLVQKG P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039750.0AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBankAP0040940.0AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627343.10.0transcription factor bHLH66
SwissprotQ9ZUG99e-77BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0E0NM440.0A0A0E0NM44_ORYRU; Uncharacterized protein
STRINGORUFI02G37320.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-40LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]